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Report for CCDS29532.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29532.1 Public Mus musculus 19 Slc22a19 23 108 98 CCDS HistoryNCBI Gene:207151Re-query CCDS DB by CCDS ID:29532.1Re-query CCDS DB by GeneID:207151See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29532.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025666.7 ENSMUSP00000025666.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025666.7Link to Ensembl Protein Viewer:ENSMUSP00000025666.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025666Re-query CCDS DB by Protein ID:ENSMUSP00000025666
Original member Current member NCBI NM_144785.2 NP_659034.1 Accepted alive Link to Nucleotide Sequence:NM_144785.2Link to Protein Sequence:NP_659034.1Re-query CCDS DB by Nucleotide ID:NM_144785Re-query CCDS DB by Protein ID:NP_659034Link to BLAST:NP_659034.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659034.1 551 Q8VCA0 551 100% 0 0

Chromosomal Locations for CCDS 29532.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 7673286 7673343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7674243 7674446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7681855 7681963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7682759 7682973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7683738 7683853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7691063 7691186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7692658 7692826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7693686 7693840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7709633 7709736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 7710792 7711193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGCCTTTCAGGACCTTATAATTCAAATTGGCAGCTTGGGGAGGTTCCAGATTCTTCACATGATATTTG
TGTTAATCTGCCATGCCCTGTCGGCTCCTCACACTCTTTTGGAGAACTTCACTGCAGCCATTCCTAGTCA
TCGCTGCTGGGTCCCCATCCTTGACAATGACACTGCCTCTGATAATGGCAGTAGGATCCTGAGCCAAGAT
GACCTCCTGAGGATCTCCATCCCCCTGGACTCCAACCTGAGACCGGATAAATGCCGTCGCTATATTCAAC
CACAGTGGCATCTCCTTCATCTGAATGGCACCTTCCCCACTGTAACAGAGCCAGACACAGAGCCCTGTGT
GGATGGCTGGGTGTATGACCAAAGCACCTTCCTCTCCACCACAGTGACCCAGTGGGACCTGGTGTGTGGA
TCTCAGGCACTGAATTCAGTGGCTAAATTTATATACATGACTGGTATCTTTATAGGATATATCATGGGTG
GCCACTTATCAGACAAGTTTGGGAGGAAGCTCATTTTCACGTGCTCTTTACTGAAAATGGCCATCACTGA
AACTTGTGTAGCTTTTGCTCCCTCCTTCCTCATCTACTGCTCACTTCGATTCCTGTCAGGGATTTTTTCC
TCAACCCTGAGGACAAACAGTGCTTTGCTCATATTAGAATGGACAAGTCCTAAGTTTCAAGCTCTGGTAA
TGGCACTGATATTTATTGCCTCAGGAGTTGGACAGACACTGTTGGGAGGCCTGGCTTTTGCTTTTCGAAA
CTGGCACCATCTCCAGCTGGCTCTTTCTGTTCCAATGTTCTTACTCCTTATTCCCACAAGGTGGTTGTCA
GAGTCAGCTCGATGGCTGATTATGGCCAACAAACCCCAGAAGAGCTTAAAGGAACTTAAAAAAGCTGCAT
GCGTAAATAGAATAAAGAATTCTGGAGATGCCCTAACCTTGGAGGTTGTGAAAACTATCATGAAGGAGGA
GTTGGAGGCAGCACAGACAAAACCCTCCCCACTGGACTTGTTCCGTACACCTAACCTTCGCAAGCGGATC
TGTCTCCTATCCTTTGTGAGATTTGTGTCAGTGATGTCTTTATTGGGCCTGCTTATCAACATCCAATACC
TAAGCAATAATGTGTTCCTACTGCAGTGTCTCTATGGTGTGGTGTGCATCCCAGCCAATGTTCTTGGAAA
TTTTTCAATGAACTACATGGGCCGCAGAATGACGCAACTGATTTTCATGTCTGTGTTGGGAATCTCCATT
CTGGCTGTTGTATTTTTGCCTCAAGAAATGCAGATCCTGCGTGTATTTTTGTCAACATTAGGAGGAGCAA
TTTCTTCTGCCTCTATAACGAGTACTCTTGTACATGCAAATGAGCTAGTCCCCACCATAATCAGGGCAAC
TGCTTTAGGAGTCGTTGGAATTGCTGGCAGTGCTGGAGGAGCGCTGTCTCCTCTACTTATGATCCTCACG
ACATACTCTGCTTCCTTGCCCTGGATCATCTATGGGATTCTTCCCTTCCTTGGTGGCCTCGTTGCCCTTC
TTCTTCCTGAGACCAAGAATCAGCCTCTGCCTGACTCAATCCAAGATATAGAAAATAAGAGGAAAAGCTC
AAAAGAGGCAAAGAAAGATGTGGTTGCCAAAGTGACACCATTATAA

Translation (551 aa):
MAFQDLIIQIGSLGRFQILHMIFVLICHALSAPHTLLENFTAAIPSHRCWVPILDNDTASDNGSRILSQD
DLLRISIPLDSNLRPDKCRRYIQPQWHLLHLNGTFPTVTEPDTEPCVDGWVYDQSTFLSTTVTQWDLVCG
SQALNSVAKFIYMTGIFIGYIMGGHLSDKFGRKLIFTCSLLKMAITETCVAFAPSFLIYCSLRFLSGIFS
STLRTNSALLILEWTSPKFQALVMALIFIASGVGQTLLGGLAFAFRNWHHLQLALSVPMFLLLIPTRWLS
ESARWLIMANKPQKSLKELKKAACVNRIKNSGDALTLEVVKTIMKEELEAAQTKPSPLDLFRTPNLRKRI
CLLSFVRFVSVMSLLGLLINIQYLSNNVFLLQCLYGVVCIPANVLGNFSMNYMGRRMTQLIFMSVLGISI
LAVVFLPQEMQILRVFLSTLGGAISSASITSTLVHANELVPTIIRATALGVVGIAGSAGGALSPLLMILT
TYSASLPWIIYGILPFLGGLVALLLPETKNQPLPDSIQDIENKRKSSKEAKKDVVAKVTPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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