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Report for CCDS29502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29502.1 Public Mus musculus 19 Men1 23 108 98 CCDS HistoryNCBI Gene:17283Re-query CCDS DB by CCDS ID:29502.1Re-query CCDS DB by GeneID:17283See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29502.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056391.14 ENSMUSP00000058149.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056391.14Link to Ensembl Protein Viewer:ENSMUSP00000058149.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000056391Re-query CCDS DB by Protein ID:ENSMUSP00000058149
Original member Current member EBI ENSMUST00000079327.11 ENSMUSP00000078306.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079327.11Link to Ensembl Protein Viewer:ENSMUSP00000078306.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000079327Re-query CCDS DB by Protein ID:ENSMUSP00000078306
Original member Current member EBI ENSMUST00000113500.7 ENSMUSP00000109128.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113500.7Link to Ensembl Protein Viewer:ENSMUSP00000109128.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113500Re-query CCDS DB by Protein ID:ENSMUSP00000109128
Original member Current member EBI ENSMUST00000113504.9 ENSMUSP00000109132.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113504.9Link to Ensembl Protein Viewer:ENSMUSP00000109132.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113504Re-query CCDS DB by Protein ID:ENSMUSP00000109132
Original member Current member NCBI NM_001168489.1 NP_001161961.1 Accepted alive Link to Nucleotide Sequence:NM_001168489.1Link to Protein Sequence:NP_001161961.1Re-query CCDS DB by Nucleotide ID:NM_001168489Re-query CCDS DB by Protein ID:NP_001161961Link to BLAST:NP_001161961.1
Original member Current member NCBI NM_008583.2 NP_032609.1 Accepted alive Link to Nucleotide Sequence:NM_008583.2Link to Protein Sequence:NP_032609.1Re-query CCDS DB by Nucleotide ID:NM_008583Re-query CCDS DB by Protein ID:NP_032609Link to BLAST:NP_032609.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161961.1 611 O88559-1 611 100% 0 0
NP_032609.1 611 O88559-1 611 100% 0 0

Chromosomal Locations for CCDS 29502.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6335461 6335905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6336725 6336933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6337153 6337281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6337479 6337519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6337601 6337688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6338283 6338419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6338826 6338961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6339339 6339503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6339687 6340172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGGGGCTGAAGGCCGCCCAGAAGACGCTGTTCCCTCTGCGCTCTATCGACGACGTGGTGCGCCTGTTTG
CTGCAGAGCTGGGCCGAGAGGAGCCTGACCTGGTGCTCCTGTCCTTGGTCCTGGGCTTCGTGGAGCATTT
CCTGGCTGTCAACCGTGTCATCCCCACCAACGTGCCGGAGCTCACCTTCCAGCCCAGCCCCGCACCCGAC
CCTCCTGGTGGCCTCACCTACTTCCCGGTGGCCGACCTATCCATCATTGCTGCCCTCTATGCCCGATTCA
CCGCTCAGATCCGCGGCGCTGTGGACCTCTCCCTCTATCCTCGAGAGGGAGGTGTTTCTAGTCGCGAACT
GGTAAAAAAGGTCTCGGATGTCATATGGAACAGCCTCAGCCGCTCCTACTTCAAGGACCGGGCCCACATC
CAGTCCCTCTTCAGCTTCATCACAGGCACCAAACTGGACAGCTCGGGCGTGGCCTTTGCAGTGGTAGGGG
CCTGCCAGGCTCTGGGTCTCAGAGATGTCCATCTGGCCCTGTCTGAAGATCATGCTTGGGTGGTGTTTGG
GCCCAACGGGGAGCAGACAGCTGAGGTGACGTGGCACGGCAAAGGCAACGAGGACCGCAGAGGCCAGACA
GTCAATGCCGGTGTGGCTGAGCGGAGCTGGCTGTACCTGAAGGGGTCGTACATGCGCTGCGACCGTAAGA
TGGAGGTGGCGTTCATGGTGTGTGCCATCAACCCTTCCATCGATCTTCACACTGACTCTTTGGAACTGTT
GCAACTACAGCAGAAGCTGCTCTGGCTGCTGTATGACCTCGGACATCTGGAAAGATACCCCATGGCGCTA
GGGAACTTGGCAGACCTGGAGGAGCTGGAGCCTACCCCGGGCCGGCCAGACCCACTCACCCTTTATCACA
AGGGAATTGCCTCAGCTAAGACCTACTACCAGGATGAACACATCTACCCCTACATGTACCTGGCTGGCTA
CCACTGTCGCAACCGAAATGTGCGCGAAGCCCTGCAGGCCTGGGCCGACACTGCCACTGTTATCCAAGAC
TACAACTACTGCCGGGAGGATGAGGAGATCTACAAGGAATTCTTTGAAGTGGCCAATGACGTCATCCCCA
ACCTGCTGAAGGAGGCGGCCAGCCTGCTAGAAACAGGCGAAGAGCGGACTGGGGAGCAAGCCCAGGGCAC
CCAGGGCCAAGGTTCTGCTCTCCAGGACCCAGAATGCTTTGCCCACCTGCTGCGATTTTATGATGGCATC
TGCAAATGGGAGGAGGGTAGCCCCACACCAGTACTGCACGTAGGCTGGGCAACTTTCCTTGTGCAGTCCC
TAGGCCGCTTCGAGGGACAGGTGCGGCAGAAGGTGCACATAGTTAGCCGGGAAGCAGAGGCGGCCGAGGC
TGAAGAACCATGGGGGGATGAAGCCCGAGAAGGCCGTCGGCGTGGTCCCCGAAGAGAGTCCAAGCCTGAG
GAGCCACCACCACCCAAGAAGCCTGCATTGGACAAGGGCCCGGGCTCAGGACAAAGTGCAGGGTCGGGAC
CACCTAGGAAAACGTCAGGGACTGTCCCAGGTACTACCCGCGGTGGCCAGGAAGTCGGCAATGCTGCTCA
GGCTCCAGCACCTGCAGCATCGCCACCCCCAGAGGGCCCAGTGCTCACTTTCCAGAGTGAGAAGATGAAA
GGCATGAAGGAGCTACTGGTGGCCACCAAGATCAACTCGAGCGCCATCAAGCTGCAACTCACGGCACAGT
CGCAAGTGCAGATGAAGAAACAGAAAGTGTCCACACCCAGCGACTACACACTCTCTTTCCTAAAGCGGCA
GCGCAAGGGCCTCTGA

Translation (611 aa):
MGLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPELTFQPSPAPD
PPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKKVSDVIWNSLSRSYFKDRAHI
QSLFSFITGTKLDSSGVAFAVVGACQALGLRDVHLALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQT
VNAGVAERSWLYLKGSYMRCDRKMEVAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMAL
GNLADLEELEPTPGRPDPLTLYHKGIASAKTYYQDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQD
YNYCREDEEIYKEFFEVANDVIPNLLKEAASLLETGEERTGEQAQGTQGQGSALQDPECFAHLLRFYDGI
CKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVHIVSREAEAAEAEEPWGDEAREGRRRGPRRESKPE
EPPPPKKPALDKGPGSGQSAGSGPPRKTSGTVPGTTRGGQEVGNAAQAPAPAASPPPEGPVLTFQSEKMK
GMKELLVATKINSSAIKLQLTAQSQVQMKKQKVSTPSDYTLSFLKRQRKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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