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Report for CCDS29468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29468.1 Public Mus musculus 19 Snx32 23 108 98 CCDS HistoryNCBI Gene:225861Re-query CCDS DB by CCDS ID:29468.1Re-query CCDS DB by GeneID:225861See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29468.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070172.5 ENSMUSP00000070915.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070172.5Link to Ensembl Protein Viewer:ENSMUSP00000070915.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000070172Re-query CCDS DB by Protein ID:ENSMUSP00000070915
Original member Current member NCBI NM_001024560.3 NP_001019731.1 Accepted alive Link to Nucleotide Sequence:NM_001024560.3Link to Protein Sequence:NP_001019731.1Re-query CCDS DB by Nucleotide ID:NM_001024560Re-query CCDS DB by Protein ID:NP_001019731Link to BLAST:NP_001019731.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019731.1 404 Q80ZJ7 404 100% 0 0

Chromosomal Locations for CCDS 29468.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5495595 5495648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5495897 5495982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5496058 5496217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5496316 5496402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5496986 5497025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5497290 5497365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5497447 5497552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5497675 5497779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5497905 5498028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5498180 5498301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5498396 5498506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5498720 5498824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5510333 5510371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGGAGGAGCAACATCAGGAAGCTGGAAATGAGAGTAAGCCTTCCTCCACGTCAGTGGATCTGCAGGGGG
ACAGTCCCTTACAGGTGGAGATTTCTGATGCAGTGAGTGAGCGGGACAAGGTGAAGTTCACTGTTCAAAC
CAAGAGTGGCCTCCCTCACTTTGCCCAGTCTGAGTTCTCAGTGGTTCGCCAGCACGAAGAGTTCATCTGG
CTACATGACACCTATGTGGAAAACGAAGAGTACGCCGGCCTCATCATTCCCCCAGCCCCTCCCAGGCCAG
ACTTTGAGGCTTCAAGGGAAAAGCTGCAGAAGTTGGGTGAGGGCAACAGCTCCATCACCCGGGAAGAATT
CTCCAAGATGAAGCAGGAGCTAGAAGCGGAATACTTGGCCATCTTTAAGAAGACTGTTGCGATGCATGAA
GTCTTCCTGCAGCGCCTGGCAGCCCATCCCACCCTGCGTCGGGACCACAACTTCTCCGTCTTCTTGGAAT
ACAGCCAGGATCTGAGTGTTCGAGAGAAGAACAGGAAGGAGGTCTTGGGAGGGCTCCTGAGGAGCATCGT
CAGGTCTGCAGATGAAGTCCTCATCACCGGCATATCAGGGCTCAAGGAGGTAGATGACTTCTTTGAGCAC
GAGAGGACCTTCCTAGTAGAATACCACACCCGAATCCGAGACACCTGCCAGAGGGCCGACCGTGTTATGC
ACTCCCACAAGTGCCTGGCAGACAACTATATCCCTATCTCTGCTGCACTGAGCAGTCTCGGAACCCAGGA
AGTCAACCAACTCAAGAGGAGCTTCCTGAAGCTGGCAGAGCTCTTTGAACGGCTGAGAAAACTGGAAGGC
CGGGTAGCCTCTGATGAGGACCTGAAGCTGTCTGACATGCTGAGATATTACATGCGAGACTCACAGGCAG
CCAAGGACCTGTTGTACCGGCGGCTTCGGGCACTGGCTGACTACGAGAATGCTAACAAGGCACTGGACAA
AGCTCGGACTAGGAACCGAGAAGTACGGCCAGCAGAGAGCCGCCAACAGCTGTGCTGCCAGCGCTTCGAG
CGCCTCTCTGACTCCGCCAAACAAGAGCTCATGGACTTCAAGTCTCGCAGGGTCTCCTCTTTCCGTAAGA
ATCTCATTGAGCTGGCCGAACTGGAGCTCAAGCACGCCAAGGCCAGCACCCTGCTTCTCCAGAACACCCT
TGTTGCCCTTAAGGGAGAGCCTTAG

Translation (404 aa):
MEEQHQEAGNESKPSSTSVDLQGDSPLQVEISDAVSERDKVKFTVQTKSGLPHFAQSEFSVVRQHEEFIW
LHDTYVENEEYAGLIIPPAPPRPDFEASREKLQKLGEGNSSITREEFSKMKQELEAEYLAIFKKTVAMHE
VFLQRLAAHPTLRRDHNFSVFLEYSQDLSVREKNRKEVLGGLLRSIVRSADEVLITGISGLKEVDDFFEH
ERTFLVEYHTRIRDTCQRADRVMHSHKCLADNYIPISAALSSLGTQEVNQLKRSFLKLAELFERLRKLEG
RVASDEDLKLSDMLRYYMRDSQAAKDLLYRRLRALADYENANKALDKARTRNREVRPAESRQQLCCQRFE
RLSDSAKQELMDFKSRRVSSFRKNLIELAELELKHAKASTLLLQNTLVALKGEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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