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Report for CCDS29452.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29452.1 Public Mus musculus 19 Rab1b 23 108 98 CCDS HistoryNCBI Gene:76308Re-query CCDS DB by CCDS ID:29452.1Re-query CCDS DB by GeneID:76308See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29452.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025804.6 ENSMUSP00000025804.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025804.6Link to Ensembl Protein Viewer:ENSMUSP00000025804.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025804Re-query CCDS DB by Protein ID:ENSMUSP00000025804
Original member Current member NCBI NM_029576.3 NP_083852.1 Accepted alive Link to Nucleotide Sequence:NM_029576.3Link to Protein Sequence:NP_083852.1Re-query CCDS DB by Nucleotide ID:NM_029576Re-query CCDS DB by Protein ID:NP_083852Link to BLAST:NP_083852.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083852.1 201 Q9D1G1 201 100% 0 0

Chromosomal Locations for CCDS 29452.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5100378 5100572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5100667 5100798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5104641 5104736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5104833 5104928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5105178 5105250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5106925 5106938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGAACCCCGAATATGACTACCTGTTTAAGCTGCTTTTGATTGGTGACTCCGGCGTGGGCAAGTCGTGCC
TGCTCCTGCGGTTTGCTGATGACACTTACACAGAGAGCTACATCAGCACCATCGGTGTGGATTTCAAGAT
TCGAACCATTGAGCTGGACGGCAAAACCATCAAACTGCAGATTTGGGACACAGCTGGTCAGGAGCGGTTC
AGGACCATCACTTCCAGCTACTATCGCGGGGCTCATGGCATCATTGTGGTGTATGACGTCACTGACCAGG
AGTCCTACGCCAACGTGAAACAGTGGCTGCAGGAGATAGATCGCTACGCCAGTGAGAATGTCAATAAACT
CCTGGTAGGCAACAAGAGTGACCTCACCACCAAGAAGGTCGTGGACAACACCACGGCCAAGGAATTTGCA
GACTCTCTGGGTGTCCCCTTCCTCGAGACAAGTGCCAAGAATGCCACCAATGTTGAGCAGGCATTCATGA
CAATGGCTGCAGAGATCAAAAAGCGGATGGGGCCAGGAGCAGCGTCTGGGGGTGAACGGCCCAACCTGAA
GATCGACAGCACCCCTGTGAAGCCTGCTAGCGGTGGCTGCTGCTAG

Translation (201 aa):
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF
RTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFA
DSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKPASGGCC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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