NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29415.1 Public Mus musculus 19 Aip 23 108 98 CCDS HistoryNCBI Gene:11632Re-query CCDS DB by CCDS ID:29415.1Re-query CCDS DB by GeneID:11632See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29415.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025767.13 ENSMUSP00000025767.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025767.13Link to Ensembl Protein Viewer:ENSMUSP00000025767.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025767Re-query CCDS DB by Protein ID:ENSMUSP00000025767
Original member Current member EBI ENSMUST00000117831.7 ENSMUSP00000113807.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117831.7Link to Ensembl Protein Viewer:ENSMUSP00000113807.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117831Re-query CCDS DB by Protein ID:ENSMUSP00000113807
Original member NCBI NM_001276284.1 NP_001263213.1 Updated not alive Link to Nucleotide Sequence:NM_001276284.1Link to Protein Sequence:NP_001263213.1Re-query CCDS DB by Nucleotide ID:NM_001276284Re-query CCDS DB by Protein ID:NP_001263213
Current member NCBI NM_001276284.2 NP_001263213.1 Accepted alive Link to Nucleotide Sequence:NM_001276284.2Link to Protein Sequence:NP_001263213.1Re-query CCDS DB by Nucleotide ID:NM_001276284Re-query CCDS DB by Protein ID:NP_001263213Link to BLAST:NP_001263213.1
Original member NCBI NM_016666.3 NP_057875.1 Updated not alive Link to Nucleotide Sequence:NM_016666.3Link to Protein Sequence:NP_057875.1Re-query CCDS DB by Nucleotide ID:NM_016666Re-query CCDS DB by Protein ID:NP_057875
Current member NCBI NM_016666.4 NP_057875.1 Accepted alive Link to Nucleotide Sequence:NM_016666.4Link to Protein Sequence:NP_057875.1Re-query CCDS DB by Nucleotide ID:NM_016666Re-query CCDS DB by Protein ID:NP_057875Link to BLAST:NP_057875.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263213.1 330 O08915 330 100% 0 0
NP_057875.1 330 O08915 330 100% 0 0

Chromosomal Locations for CCDS 29415.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4114591 4114796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4115081 4115222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4115320 4115496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4115982 4116170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4118087 4118266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4121336 4121434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGGCGGATCTCATCGCAAGACTTCGAGAGGACGGGATCCAAAAGCGTGTGATACAGGAGGGCCGAGGAG
AGTTGCCGGACTTTCAGGATGGCACTAAGGCCACGTTCCACTTTCGGACGCTGCACAGTGACAATGAAGG
CTCCGTTATAGATGACAGCCGAACACGAGGCAAGCCCATGGAGCTCATCGTTGGCAAGAAGTTCAAGTTG
CCTGTGTGGGAGACCATCGTGTGCACCATGCGTGAGGGGGAGATTGCCCAGTTCCTCTGTGACATCAAGC
ACGTAGTCCTGTATCCTCTAGTGGCCAAGAGCCTCCGCAACATCGCCGAGGGCAAGGACCCCCTGGAGGG
ACAGCGGCATTGCTGTGGGATCGCTCAGATGCATGAACACAGCTCCCTGGGTCATGCGGACCTGGATGCC
CTGCAGCAGAACCCACAGCCTCTCATCTTCCACATCGAGATGCTGAAGGTAGAGAGTCCTGGCACCTATC
AACAGGACCCATGGGCGATGACAGATGAGGAGAAAGCAAAGGCAGTACCAGTCATCCACCAAGAGGGCAA
CCGGTTGTACCGTGAGGGCCAGGTGAAAGAGGCTGCTGCCAAGTACTATGACGCCATCGCCTGCCTCAAG
AATCTGCAGATGAAGGAGCAGCCTGGCTCACCTGACTGGATCCAGTTGGACCTGCAGATCACACCACTGC
TACTCAACTATTGCCAGTGCAAGCTGGTGGCTCAGGAGTATTATGAAGTGTTGGATCACTGCTCCTCCAT
CCTCAACAAGTATGATGACAATGTCAAGGCTTACTTCAAGAGGGGTAAGGCCCATGCTGCCGTGTGGAAT
GCCCAGGAGGCCCAGGCTGACTTTGCCAAGGTGTTGGAGCTAGACCCTGCCCTGGCGCCTGTGGTAAGCA
GAGAGCTGCGGGCCCTGGAGACACGGATCCGGCAGAAGGATGAGGAGGACAAAGCTCGCTTCCGGGGCAT
CTTTTCCCACTGA

Translation (330 aa):
MADLIARLREDGIQKRVIQEGRGELPDFQDGTKATFHFRTLHSDNEGSVIDDSRTRGKPMELIVGKKFKL
PVWETIVCTMREGEIAQFLCDIKHVVLYPLVAKSLRNIAEGKDPLEGQRHCCGIAQMHEHSSLGHADLDA
LQQNPQPLIFHIEMLKVESPGTYQQDPWAMTDEEKAKAVPVIHQEGNRLYREGQVKEAAAKYYDAIACLK
NLQMKEQPGSPDWIQLDLQITPLLLNYCQCKLVAQEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWN
AQEAQADFAKVLELDPALAPVVSRELRALETRIRQKDEEDKARFRGIFSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH