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Report for CCDS29371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29371.1 Public Mus musculus 18 Sall3 23 108 98 CCDS HistoryNCBI Gene:20689Re-query CCDS DB by CCDS ID:29371.1Re-query CCDS DB by GeneID:20689See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29371.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057950.8 ENSMUSP00000056967.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057950.8Link to Ensembl Protein Viewer:ENSMUSP00000056967.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000057950Re-query CCDS DB by Protein ID:ENSMUSP00000056967
Original member Current member NCBI NM_178280.4 NP_840064.2 Accepted alive Link to Nucleotide Sequence:NM_178280.4Link to Protein Sequence:NP_840064.2Re-query CCDS DB by Nucleotide ID:NM_178280Re-query CCDS DB by Protein ID:NP_840064Link to BLAST:NP_840064.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_840064.2 1248 Q62255-2 1248 100% 0 0

Chromosomal Locations for CCDS 29371.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 80969473 80969904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80971181 80971521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80971738 80974629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 80986455 80986536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3747 nt):
ATGTCTCGGCGCAAGCAGGCCAAGCCCCAGCATCTCAAGTCGGACGAGGAGCTACCGCCGCAGGACGGGG
CTTCGGAGCACGGCGTCCCGGGGGACGGTGCGGAGGACGCAGACAGCGGCAGCGAGAGCAGGAGCGGCAG
CGAGGAAACCAGCGTGTGTGAGAAGTGCTGTGCAGAGTTCTTCAAGTGGGCGGACTTCCTGCAGCACAAG
AAGACCTGCACCAAGAACCCACTGGTGCTGATCGTGCACGACGATGAGCCGGCGCCGCCCTCTGAGGACT
TTCCAGAACCTTCTCCCGCCAGCTCGCCCAGTGACCGCACTGAGAGTGAGGTGGCTGAGGAGGTGGCGCC
CACGGAGGGCAGCGAGGTGAAGGCTGCTACAAAGGAGGCGGAGCCCATGGATGTGGAGGTATCTACGGAC
AAGGGCCCTCCAGGCCCAAGTGTACCCCCACCGCCGCCTGCACTGCCGCCACAGCCAGAGCCTGCGGCCT
TCAGCATGCCTAGTACCAATGTGACCCTGGAGACGCTGCTCAGCACCAAGGTGGCCGTGGCACAGTTCTC
ACAGGGTGCACGTGCGGGCGGCACCACAGGCGCTGGTGGCAGCGTGGGCGCGGTGGCCATCCCCATGATC
CTGGAGCAGCTGGTGGCGCTGCAGCAGCAGCAGATCCACCAACTTCAGCTCATCGAGCAGATCCGCAGCC
AGGTGGCCCTGATGAGCCGGCAGCCTGGGCCTCCATTGAAGCCCTCAGCCAGTGCCCCTGGAACAGCCTC
AGTACAGCTTCAGGGTCTGACTCCCCATGCGGCCCTCCAGCTTTCTGCTGGCCCTGCCACTGCCTCTGCT
GGCTCGGGCTCCACGCTGCCGGCAGCCTTCGATGGCCCCCAGCACCTGTCACAGCCTGCATCCGGCACAA
GCACTCCCTGCAGCACCAGTGCTGCCCCCCCTGATTCTGGGGCACACCCAGCCTGTAGCACTGGCCCAGC
TCCAGGAGCCGTGGCCGCTGCATCCAGCACTGTAGGCAACGCGGTGCAGCCCCAAAATGCATCCACGCCC
CCTGCCCTGGGTCCTGGACCCCTCCTCAGCTCAGCCTCCAATCTGCCAAACCCTCTGCTACCTCAGACTT
CATCCAGCAGTGTCATCTTCCCCAACCCGCTGGTTAGCATTGCTGCCACCGCCAATGCCCTGGATCCCCT
GTCGGCTCTGATGAAGCACCGCAAGGGCAAGCCCCCTAATGTTTCAGTGTTCGAGCCCAAGGCCAGTGCC
GAGGACCCTTTCTTTAAGCACAAGTGCAGGTTCTGTGCCAAGGTCTTCGGCAGTGACAGTGCGTTGCAGA
TCCACCTACGATCCCACACAGGGGAGCGGCCCTTCAAATGTAACATCTGCGGGAACCGCTTTTCCACCAA
GGGCAACCTGAAGGTCCACTTTCAGAGGCACAAGGAGAAGTACCCCCACATCCAGATGAACCCCTACCCT
GTCCCAGAATACCTCGACAATGTGCCCACCTGCTCTGGGATCCCCTATGGCATGTCCCTGCCCCCAGAAA
AGCCGGTGACCACCTGGCTGGACAGCAAGCCAGTGCTGCCCACTGTACCAACATCAGTAGGGCTCCAGCT
GCCCCCCACCGTCCCTGGCACCCACAACTACACTGACTCCCCTAGCATCACTCCGGTCAGCCGCTCCCCA
CAGAGGCCCTCTCCAGCATCCAGCGAATGCACCTCTCTGTCCCCAGGCCTCAACAATACTGAGTCTGGTA
TCACAGTGAGGCCCGAGTCACCCCAGCCACTCCTGGGTGGGCCTTCGCTTACTAAAGCCGAGCCAGTCAG
CCTGCCTTGCACAAGTACAAGGACAGGAGATGCTCCTGTGGTGGGTGGGCAGGTCAGTGGGTTGCCCACT
TCAGCTGCCACTGCTGTCACTGACAGCGCCTGCACAAGTCTCGGGAGCCCTGGTCTTCCAGCCGTCTCTG
ACCAATTCAAGGCCCAGTTTCCTTTCGGCGGGCTGCTTGACTCTATGCAAACGTCAGAGACCTCGAAACT
GCAGCAGCTAGTGGAGAACATCGATAAGAAGATGACCGACCCGAACCAGTGTGTCATCTGCCACCGCGTG
CTGAGCTGCCAGAGTGCACTGAAGATGCACTACAGGACCCACACAGGGGAAAGGCCCTTCAAGTGTAAGA
TTTGTGGCCGCGCCTTCACCACCAAAGGCAACCTGAAGACGCACTTCGGGGTACACCGCGCCAAGCCCCC
ACTCCGCGTGCAGCATTCCTGCCCCATCTGCCAGAAGAAGTTCACGAACGCCGTCGTGCTGCAACAGCAT
ATCCGTATGCACATGGGAGGACAGATCCCAAACACGCCACTGCCTGAGGGCCTGCAGGAGGCCATGGACG
CCGACCTGCCCTTTGATGAAAAGAACGCAGAGACCCTCAGCAGCTTTGACGATGACATCGACGAGAACTC
CATGGAGGAGGACTCGGAGCTGAAGGACACGGCCAGCGACTCGTCTAAACCACTTCTGTCTTACTCGGGC
TCCTGTCCGCCCTCGCCCCCGTCGGTCATCTCCAGCATCGCTGCCCTCGAGAACCAGATGAAAATGATTG
ACTCGGTCATGAACTGCCAGCAACTGGCCAACTTGAAGTCGGTGGAAAACGGGTCTGGGGAAAGCGATCG
CTTGAGCAACGACTCCTCCTCTGCGGTGGGCGACCTGGAGAGCCGCAGTGCAGGCAGCCCTGCCCTATCG
GAGTCCTCGTCCTCCCAGGCTCTGTCCCCTGCTCACAGTAATGGTGAGAGCTTCCGGTCCAAGTCGCCAG
GCCTTGGCCACCAGGAAGATCCGCAGGAGATCCCACTGAAGACTGAAAGGCTAGACAGCCCACCCCCCGG
CCCAGGAAATGGAGGTGCCCTGGACCTGACAGCGGGCCACCCTGGTCGGCCACTCATCAAGGAGGAGGCC
CCTTTCAGCCTGCTGTTCCTGAGCAGAGAGCGCGGTCCCAGCCACAGCACGCCTAGCCTGGCCTCCAGCC
CTGCGCCCACCATGATCAAAATGGAAGTGAACGGCCACAGCAAGGCTATCGCACTGGGTGAGGGTCCAGC
GCTACCAGCCGGAGTCCAGGTCCCTACTGGGCCCCAGACAGTGATGAGCCCTGGCCTGGCACCCATGCTG
GCACCCCCTCCACGCCGGACACCCAAGCAGCACAACTGTCAGTCATGTGGGAAGACCTTCTCCTCAGCCA
GTGCCCTGCAGATCCATGAGCGCACCCACACTGGGGAGAAGCCCTTTGGCTGCACCATCTGCGGCAGGGC
CTTCACCACCAAGGGCAATCTCAAGGTACACATGGGCACCCACATGTGGAACAATGCACCCGCGAGGCGT
GGCCGCCGCCTGTCTGTGGAGAACCCCATGGCTCTGCTCGGTGGCGATGCTCTCAAGTTCTCTGAGATGT
TCCAGAAGGACCTGGCAGCTCGAGCGATGAATGTGGACCCCAGCTTTTGGAACCAGTACGCCGCTGCCAT
CACCAACGGGCTGGCCATGAAGAACAATGAGATCTCTGTCATCCAGAACGGAGGCATCCCTCAGCTCCCA
GTAAGTCTAGGCGGAGGTGCCATCCCGCCTTTGGGTGCCATGGCCAGTGGGGTGGACAAGGCACGCACTG
GCAGTAGTCCGCCCATTGTCAGCTTGGACAAAGCGAGCTCAGAGACGGGAGCCAGCCGGCCATTCGCGAG
GTTCATTGAGGATAACAAGGAGATTGGGATCAATTAG

Translation (1248 aa):
MSRRKQAKPQHLKSDEELPPQDGASEHGVPGDGAEDADSGSESRSGSEETSVCEKCCAEFFKWADFLQHK
KTCTKNPLVLIVHDDEPAPPSEDFPEPSPASSPSDRTESEVAEEVAPTEGSEVKAATKEAEPMDVEVSTD
KGPPGPSVPPPPPALPPQPEPAAFSMPSTNVTLETLLSTKVAVAQFSQGARAGGTTGAGGSVGAVAIPMI
LEQLVALQQQQIHQLQLIEQIRSQVALMSRQPGPPLKPSASAPGTASVQLQGLTPHAALQLSAGPATASA
GSGSTLPAAFDGPQHLSQPASGTSTPCSTSAAPPDSGAHPACSTGPAPGAVAAASSTVGNAVQPQNASTP
PALGPGPLLSSASNLPNPLLPQTSSSSVIFPNPLVSIAATANALDPLSALMKHRKGKPPNVSVFEPKASA
EDPFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTKGNLKVHFQRHKEKYPHIQMNPYP
VPEYLDNVPTCSGIPYGMSLPPEKPVTTWLDSKPVLPTVPTSVGLQLPPTVPGTHNYTDSPSITPVSRSP
QRPSPASSECTSLSPGLNNTESGITVRPESPQPLLGGPSLTKAEPVSLPCTSTRTGDAPVVGGQVSGLPT
SAATAVTDSACTSLGSPGLPAVSDQFKAQFPFGGLLDSMQTSETSKLQQLVENIDKKMTDPNQCVICHRV
LSCQSALKMHYRTHTGERPFKCKICGRAFTTKGNLKTHFGVHRAKPPLRVQHSCPICQKKFTNAVVLQQH
IRMHMGGQIPNTPLPEGLQEAMDADLPFDEKNAETLSSFDDDIDENSMEEDSELKDTASDSSKPLLSYSG
SCPPSPPSVISSIAALENQMKMIDSVMNCQQLANLKSVENGSGESDRLSNDSSSAVGDLESRSAGSPALS
ESSSSQALSPAHSNGESFRSKSPGLGHQEDPQEIPLKTERLDSPPPGPGNGGALDLTAGHPGRPLIKEEA
PFSLLFLSRERGPSHSTPSLASSPAPTMIKMEVNGHSKAIALGEGPALPAGVQVPTGPQTVMSPGLAPML
APPPRRTPKQHNCQSCGKTFSSASALQIHERTHTGEKPFGCTICGRAFTTKGNLKVHMGTHMWNNAPARR
GRRLSVENPMALLGGDALKFSEMFQKDLAARAMNVDPSFWNQYAAAITNGLAMKNNEISVIQNGGIPQLP
VSLGGGAIPPLGAMASGVDKARTGSSPPIVSLDKASSETGASRPFARFIEDNKEIGIN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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