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Report for CCDS29353.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29353.1 Public Mus musculus 18 St8sia5 23 108 98 CCDS HistoryNCBI Gene:225742Re-query CCDS DB by CCDS ID:29353.1Re-query CCDS DB by GeneID:225742See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29353.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079618.10 ENSMUSP00000078566.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079618.10Link to Ensembl Protein Viewer:ENSMUSP00000078566.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000079618Re-query CCDS DB by Protein ID:ENSMUSP00000078566
Original member NCBI NM_153124.2 NP_694764.2 Updated not alive Link to Nucleotide Sequence:NM_153124.2Link to Protein Sequence:NP_694764.2Re-query CCDS DB by Nucleotide ID:NM_153124Re-query CCDS DB by Protein ID:NP_694764
Current member NCBI NM_153124.3 NP_694764.2 Accepted alive Link to Nucleotide Sequence:NM_153124.3Link to Protein Sequence:NP_694764.2Re-query CCDS DB by Nucleotide ID:NM_153124Re-query CCDS DB by Protein ID:NP_694764Link to BLAST:NP_694764.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_694764.2 376 P70126-2 376 100% 0 0

Chromosomal Locations for CCDS 29353.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 77186095 77186225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77232793 77232885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77242104 77242190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77246067 77246211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77248437 77248549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77253017 77253109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77254366 77254834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGCGCTACGCAGACCCCTCCGCCAACAGAGATTTGTTGGGGAATCGAACTTTGCTCTTTATCTTCATCT
GCGCCTTTGCCTTGGTGACCTTGCTTCAGCAGATCCTGTACAGCAAGAGCTACATCAAAAGGTACTTCGA
GTTTTACAAGGAGCCTTTAGAGTTTAACTCCACGAGATGCCTGGAGCTGAGGCAGGAGATCCTGGAGGTG
AAGGTGCTGTCCATGGTGAAGCAGTCTGAACTCTTCGAAAGGTGGAAGAGTCTCCAGATATGCAAATGGG
CAATGGACACCGCGGAAGCCAGCCTCTTCAAGTCCACCTTGTCCAGGTGCTGCAATGCCCCCAGCTTTCT
CTTCACCACCCAGAAGAACACCCCGGTGGAGACGAATCTCAGGTATGAGGTGGAATCCAGCGGCTTATAT
CACATCGACCAGGAGATCTTCAAAATGTTTCCCAAGGAAATGCCCTACTACCGCTCTCAGTTTAAGAAGT
GTGCTGTGGTGGGCAATGGCGGCATCTTGAAGAACAGCGGCTGCGGGAAGGAGATCAACAGTGCTGACTT
TGTCTTCCGGTGCAACCTGCCCCCCATCTCAGGGATATATACCACAGATGTGGGAGAGAAGACAGATGTA
GTCACCGTGAATCCCAGCATCATAATTGACAGGTTCCACAAGTTGGAGAAGTGGCGGCGGCCTTTCTTCA
GCGTGCTGCAGAGGTACGAGAACGCCTCAGTGCTGCTGCCAGCGTTCTACAACGTCCGCAACACCCTGGT
ATCCTTCCGAGTCAAATACATGCTGGACGACTTCCAGTCGCGGCAGCCGGTCTACTTCTTCCACCCGCAG
TACCTGAGCAGTGTGTCGCGCTACTGGCTCAGCCTGGGTGTGCGCGCGCGGCGTATCAGCACCGGCCTCA
TCCTGGTCACCGCGGCCCTGGAGCTCTGCGAGGAGGTGCACCTGTTCGGTTTCTGGGCCTTCCCCATGAA
CCCCTCCGGCTTCTTCATCACGCACCATTACTATGACAACGTCAAGCCCAAGCCGGGTTTCCATGCTATG
CCCTCGGAGATCTTCACCTTCCTGCGCATGCACAGCCGCGGCATCCTTCGCGTGCACACAGGCACCTGCA
ATTGCTGCTGA

Translation (376 aa):
MRYADPSANRDLLGNRTLLFIFICAFALVTLLQQILYSKSYIKRYFEFYKEPLEFNSTRCLELRQEILEV
KVLSMVKQSELFERWKSLQICKWAMDTAEASLFKSTLSRCCNAPSFLFTTQKNTPVETNLRYEVESSGLY
HIDQEIFKMFPKEMPYYRSQFKKCAVVGNGGILKNSGCGKEINSADFVFRCNLPPISGIYTTDVGEKTDV
VTVNPSIIIDRFHKLEKWRRPFFSVLQRYENASVLLPAFYNVRNTLVSFRVKYMLDDFQSRQPVYFFHPQ
YLSSVSRYWLSLGVRARRISTGLILVTAALELCEEVHLFGFWAFPMNPSGFFITHHYYDNVKPKPGFHAM
PSEIFTFLRMHSRGILRVHTGTCNCC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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