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Report for CCDS29314.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29314.1 Public Mus musculus 18 Ccbe1 23 108 98 CCDS HistoryNCBI Gene:320924Re-query CCDS DB by CCDS ID:29314.1Re-query CCDS DB by GeneID:320924See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29314.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061103.13 ENSMUSP00000052011.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061103.13Link to Ensembl Protein Viewer:ENSMUSP00000052011.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000061103Re-query CCDS DB by Protein ID:ENSMUSP00000052011
Original member Current member EBI ENSMUST00000130300.2 ENSMUSP00000117636.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130300.2Link to Ensembl Protein Viewer:ENSMUSP00000117636.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130300Re-query CCDS DB by Protein ID:ENSMUSP00000117636
Original member Current member NCBI NM_178793.4 NP_848908.1 Accepted alive Link to Nucleotide Sequence:NM_178793.4Link to Protein Sequence:NP_848908.1Re-query CCDS DB by Nucleotide ID:NM_178793Re-query CCDS DB by Protein ID:NP_848908Link to BLAST:NP_848908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848908.1 408 Q3MI99 408 100% 0 0

Chromosomal Locations for CCDS 29314.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 66061287 66061520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66065869 66065904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66066583 66066618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66066729 66066868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66071201 66071321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66076308 66076411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66083095 66083247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66084738 66084872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66093998 66094050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66291132 66291212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 66291621 66291754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1227 nt):
ATGGTGCCGCCGCCTCTTCCGAGCCGGGGAGGAGCAGCCAAGAGGCAGCTGGGCAAGAGCCTGGGGCCGC
TGCTGCTACTCCTGGCGCTGGGACACACGTGGACCTACCGAGAGGAACCCGAGGACCGCGACAGAGAAGT
GTGCTCTGAAAACAAGATCACCACGACCAAATACCCATGTCTGAAGTCTTCGGGCGAGCTCACCACGTGC
TTCAGGAAAAAATGCTGCAAAGGATATAAATTTGTTCTTGGACAGTGTATTCCAGAAGATTATGACATTT
GTGCCCAAGCTCCCTGTGAACAGCAGTGCACGGATAACTTCGGCCGTGTGCTGTGCACGTGCTACCCGGG
ATACCGATATGACCGCGAGAGACACCAAAAGCGGGAGAGACCGTACTGTCTGGATATCGATGAATGTGCC
ACCAGCAATACCACTCTCTGTGCACATATCTGCATCAACACCATGGGCAGCTACCACTGTGAGTGTCGGG
AGGGCTACATCCTTGAGGACGATGGGAGGACCTGCACAAGGGGAGACAAATACCCCAATGACACTGGGCA
TGAAGAGAAGTCCGAGAATGAGGTGAAAGCCGGGACCTGCTGCGCCACATGCAAAGAGTTCTCCCAGATG
AAGCAGACCGTGCTGCAGCTGAAACAGAAGATGGCGCTGCTCCCCAACAATGCCGCTGAACTGGGCAAGT
ATGTCAATGGTGACAAGGTACTGGCCTCAAACGCCTACCTTCCAGGACCTCCTGGCCTGCCTGGGGGACA
GGGCCCACCAGGCTCACCAGGACCCAAGGGGAGCCCTGGATTCCCCGGTATGCCAGGCCCTCCTGGACAG
CCAGGCCCACGGGGCTCAATGGGACCTATGGGACCTTCCCCTGACCTGTCTCATATTAAGCAAGGCCGGA
GGGGCCCCGTGGGCCCACCAGGAGCACCAGGAAGACACGGCTCCAAGGGGGAGAGAGGAGCACCCGGACC
CCCGGGGTCTCCGGGACCCCCAGGTTCTTTCGACTTCCTGCTGCTTGTGCTGGCGGACATTCGAAATGAC
ATCGCAGAGCTGCAGGAGAAGGTGTTTGGACACCGGACTCACTCTTCCGCCGAGGACTTCCCCCTACCTC
AGGAATTCTCCAGCTACCCAGAGACGCTGGACTTTGGCTCTGGAGATGACTACTCCAGAAGAACTGAAGC
AAGGGACCCCGAGGCCCCAAGAAATTTTTATCCATAG

Translation (408 aa):
MVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHTWTYREEPEDRDREVCSENKITTTKYPCLKSSGELTTC
FRKKCCKGYKFVLGQCIPEDYDICAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECA
TSNTTLCAHICINTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQM
KQTVLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQ
PGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGPPGSFDFLLLVLADIRND
IAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSRRTEARDPEAPRNFYP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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