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Report for CCDS29279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29279.1 Public Mus musculus 18 Cdx1 23 108 98 CCDS HistoryNCBI Gene:12590Re-query CCDS DB by CCDS ID:29279.1Re-query CCDS DB by GeneID:12590See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29279.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025521.8 ENSMUSP00000025521.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025521.8Link to Ensembl Protein Viewer:ENSMUSP00000025521.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025521Re-query CCDS DB by Protein ID:ENSMUSP00000025521
Original member NCBI NM_009880.3 NP_034010.3 Updated not alive Link to Nucleotide Sequence:NM_009880.3Link to Protein Sequence:NP_034010.3Re-query CCDS DB by Nucleotide ID:NM_009880Re-query CCDS DB by Protein ID:NP_034010
Current member NCBI NM_009880.4 NP_034010.3 Accepted alive Link to Nucleotide Sequence:NM_009880.4Link to Protein Sequence:NP_034010.3Re-query CCDS DB by Nucleotide ID:NM_009880Re-query CCDS DB by Protein ID:NP_034010Link to BLAST:NP_034010.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034010.3 268 P18111 268 100% 0 0

Chromosomal Locations for CCDS 29279.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 61019726 61019941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61020374 61020519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 61035676 61036120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGTACGTGGGCTATGTGCTGGACAAGGACTCCCCCGTGTACCCAGGCCCCGCCAGACCCTCCAGCCTCG
GCCTGGGCCCTCCGACCTATGCGCCCCCTGGCCCGGCGCCCGCGCCCCCGCAGTACCCCGACTTCGCGGG
TTACACGCACGTGGAGCCGGCGCCCGCGCCCCCTCCGACCTGGGCTGCGCCCTTCCCTGCGCCCAAGGAC
GACTGGGCAGCTGCCTATGGCCCGGGCCCCACGGCCTCAGCCGCCAGCCCGGCCCCGCTGGCCTTCGGGC
CCCCTCCGGACTTTAGCCCGGTGCCCGCGCCTCCCGGGCCTGGTCCCGGCATCCTGGCGCAGTCCCTCGG
GGCTCCGGGCGCACCGTCCTCGCCAGGAGCGCCAAGGCGGACGCCCTACGAATGGATGCGGCGCAGCGTG
GCGGCTGCAGGCGGCGGTGGCAGCGGTAAGACCCGAACCAAGGACAAGTACCGTGTGGTCTACACAGACC
ACCAACGCCTAGAGCTGGAAAAGGAGTTTCACTACAGCCGGTACATCACTATCCGGCGCAAGTCCGAGCT
GGCTGCTAACCTGGGGCTCACAGAGCGGCAGGTAAAGATCTGGTTCCAGAACCGCCGGGCCAAGGAGCGC
AAAGTAAACAAGAAGAAACAGCAGCAGCAGCAGCCCCTGCCTCCCACACAGCTGCCCCTGCCCCTGGATG
GCACTCCCACACCATCAGGGCCACCCCTAGGAAGTCTATGCCCTACTAATGCTGGCCTTCTGGGCACCCC
CTCCCCAGTGCCCGTCAAGGAGGAGTTTCTACCCTAG

Translation (268 aa):
MYVGYVLDKDSPVYPGPARPSSLGLGPPTYAPPGPAPAPPQYPDFAGYTHVEPAPAPPPTWAAPFPAPKD
DWAAAYGPGPTASAASPAPLAFGPPPDFSPVPAPPGPGPGILAQSLGAPGAPSSPGAPRRTPYEWMRRSV
AAAGGGGSGKTRTKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKER
KVNKKKQQQQQPLPPTQLPLPLDGTPTPSGPPLGSLCPTNAGLLGTPSPVPVKEEFLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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