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Report for CCDS29250.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29250.1 Public Mus musculus 18 Gykl1 23 108 98 CCDS HistoryNCBI Gene:14625Re-query CCDS DB by CCDS ID:29250.1Re-query CCDS DB by GeneID:14625See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29250.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000066193.4 ENSMUSP00000067598.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000066193.4Link to Ensembl Protein Viewer:ENSMUSP00000067598.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000066193Re-query CCDS DB by Protein ID:ENSMUSP00000067598
Original member Current member NCBI NM_010293.3 NP_034423.2 Accepted alive Link to Nucleotide Sequence:NM_010293.3Link to Protein Sequence:NP_034423.2Re-query CCDS DB by Nucleotide ID:NM_010293Re-query CCDS DB by Protein ID:NP_034423Link to BLAST:NP_034423.2

Chromosomal Locations for CCDS 29250.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 52693722 52695371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGGCAGAGGCTCCAAAAGCGGTTTTGGGGCCGTTGGTAGGGGCAGTGGACCAAGGTACCAGCTCAACAC
GTTTTTTGGTTTTCAATCCCCAAACAGCTGAATTACTTTGTCATCATCAAGTGGAAATAGCCCAGGAGTT
CCCAAAAGAAGGATGGGTAGAGCAAGACCCAAAGGCAATCCTGCAGTCTGTGTACGAGTGTATAGAGAAA
GCATGTGAGAAACTCGGACAGCAGAGCATTGATATTTCCAACATAAAAGCTATCGGTGTCACCAACCAGC
GGGAAACTACGATAGTCTGGGACAAGTTCACTGGAGAACCTCTCTACAATGCTGTGGTGTGGCTTGACCT
AAGGACCCAGTCTACTGTGGAGAATCTCAGCAAAAGTATTTCAGTAAGCAATAACTTTGTCAAGAACAAG
ACAGGCCTTCCAATCAGCACTTATTTTAGTGCCGTGAAACTTCACTGGCTCATTGAAAATGTGAGAAAAG
TGCAAAAGGCTATTGAAGATGGCAGAGCTATTTTTGGGACGGTTGATTCGTGGCTTATCTGGTGTATGAC
TGGAGGTATCAACGGAGGTGTCCACTGTACAGATGTAAGTAATGCCAGCAGGACCATGCTTTTCAACATT
CACTCTTTGCAATGGGATGAAGAGCTCTGCGACTTTTTTGGAATTCCAATGACCATCCTTCCCCGAATCC
GGAGTTCTTCTGAGATCTATGGCCTAGTGAAAAGTGGCGTGTTGGAAGGTGTGCCAATATCTGGATGTCT
GGGAGACCAGTCTGCTGCTTTGGTGGGACAACTGTGTCTTCAGGACGGACAAGCTAAAAGCACATATGGA
ACAGGCTGTTTCTTACTATGTAACACAGGCCAGAAGTGTGTAAACTCTGAACATGGCCTTCTGACCACAG
TGGCTTACCAGCTTGGCAGACAGGAGCCTGTCTATTATGCCCTGGAAGGTTCCGTAGCCATAGCCGGTGC
TGTTGTTAGCTGGATAAAAAACAATCTTCAAATTATTCAGTCTTCATCGGAAATTGAAAAACTTGCTGAA
GTAGCAGGGACTTCTTATGGTTGTTACTTCGTCCCAGCCTTTTCAGGCTTATACGCTCCATATTGGGACC
CAAGTGCGAGAGGGATCATCTGCGGGCTCACCCAGTTCACCAATAAGTTCCATATTGCCTTTGCTGCGTT
AGAAGCTGTTTGCTTCCAAACGCGGGAGATTTTGGATGCCATGAACAGTGATTGTGGAATCCCGCTGACG
CATTTGCAGGTAGATGGAGGAATGACCGCAAACAGAGTTCTCATGCAACTGCAGGCGGACATTCTGTGTA
TTCCGGTGATGAAACCTTTCATGCCAGAAACAACTGCACTGGGAGTCGCAATGGCAGCGGGAGCGGCAGA
AGGAGTTAGCGTGTGGAGTCTGGATCCTAAGGATTTGTCAAGTGTCCAGATGGAGAAGTTTGAACCCCAG
ATCAATGTCGAGGAAAGTGAAGGTCGTTACGCCACATGGAAGAAAGCTGTGCTGAAGTCAATGGGTTGGG
TTTTGACTCAGTCTCCTGATGGTCGCGACCCTAGTATTTTCAGCAGCCTGACGCTGGGCTTTTATGTAGT
GAGTAGTATGGTGATATTAATTGGAGCAAGGTACATGTAA

Translation (549 aa):
MAEAPKAVLGPLVGAVDQGTSSTRFLVFNPQTAELLCHHQVEIAQEFPKEGWVEQDPKAILQSVYECIEK
ACEKLGQQSIDISNIKAIGVTNQRETTIVWDKFTGEPLYNAVVWLDLRTQSTVENLSKSISVSNNFVKNK
TGLPISTYFSAVKLHWLIENVRKVQKAIEDGRAIFGTVDSWLIWCMTGGINGGVHCTDVSNASRTMLFNI
HSLQWDEELCDFFGIPMTILPRIRSSSEIYGLVKSGVLEGVPISGCLGDQSAALVGQLCLQDGQAKSTYG
TGCFLLCNTGQKCVNSEHGLLTTVAYQLGRQEPVYYALEGSVAIAGAVVSWIKNNLQIIQSSSEIEKLAE
VAGTSYGCYFVPAFSGLYAPYWDPSARGIICGLTQFTNKFHIAFAALEAVCFQTREILDAMNSDCGIPLT
HLQVDGGMTANRVLMQLQADILCIPVMKPFMPETTALGVAMAAGAAEGVSVWSLDPKDLSSVQMEKFEPQ
INVEESEGRYATWKKAVLKSMGWVLTQSPDGRDPSIFSSLTLGFYVVSSMVILIGARYM


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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