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Report for CCDS29230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29230.1 Public Mus musculus 18 Pggt1b 23 108 98 CCDS HistoryNCBI Gene:225467Re-query CCDS DB by CCDS ID:29230.1Re-query CCDS DB by GeneID:225467See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000236216.1 ENSMUSP00000158214.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236216.1Link to Ensembl Protein Viewer:ENSMUSP00000158214.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236216Re-query CCDS DB by Protein ID:ENSMUSP00000158214
Original member NCBI NM_172627.3 NP_766215.1 Updated not alive Link to Nucleotide Sequence:NM_172627.3Link to Protein Sequence:NP_766215.1Re-query CCDS DB by Nucleotide ID:NM_172627Re-query CCDS DB by Protein ID:NP_766215
Current member NCBI NM_172627.4 NP_766215.1 Accepted alive Link to Nucleotide Sequence:NM_172627.4Link to Protein Sequence:NP_766215.1Re-query CCDS DB by Nucleotide ID:NM_172627Re-query CCDS DB by Protein ID:NP_766215Link to BLAST:NP_766215.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766215.1 377 Q8BUY9 377 100% 0 0

Chromosomal Locations for CCDS 29230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 46241520 46241701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46246562 46246670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46248871 46249055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46254279 46254324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46258085 46258217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46259604 46259755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46262890 46262957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46274590 46274708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 46280680 46280819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1134 nt):
ATGGCCACCACCGAGGACGACAGGCTGGCGGGGAGCGGAGAAGGAGAACGGCTGGATTTCCTGCGGGACC
GGCACGTGCGGTTCTTTCAGCGCTGCCTCCAGGTCTTGCCGGAGCGGTATTCCTCGCTGGAGACCAGCAG
GTTGACAATTGCCTTTTTTGCACTCTCTGGGCTGGATATGCTGGACTCCTTGGATGTGGTGAACAAAGAC
GATATAATAGAGTGGATCTACTCCCTGCAGGTTCTTCCCACAGAAGACAGGTCAAATCTGAGTCGCTGTG
GTTTCCGAGGTTCTTCATACCTGGGTATTCCATTCAATCCATCAAAGAATCCAGGAGCAGCCCATCCTTA
CGACAGTGGACACATAGCGATGACGTACACGGGGCTTTCCTGTCTGATCATCCTTGGAGATGACTTAGGC
CGTGTGGATAAAGAGGCTTGCTTAGCAGGCTTGAGAGCGCTTCAGCTGGAAGACGGGAGCTTCTGTGCGG
TTCCTGAAGGCAGTGAGAATGACATGAGGTTTGTGTACTGCGCATCCTGCATTTGCTATATGCTCAACAA
CTGGTCGGGCATGGATATGAAGAAAGCCATCAGCTACATTAGAAGAAGTATGTCCTATGACAATGGGCTG
GCCCAGGGAGCAGGCCTTGAGTCTCATGGAGGATCCACCTTCTGTGGCATTGCGTCACTGTGCCTGATGG
GTAAACTGGAAGAAGTTTTTTCAGAGAAAGAACTGAACAGGATAAAGAGGTGGTGCATAATGAGGCAGCA
GAACGGGTACCACGGGAGGCCTAACAAGCCCGTCGACACCTGCTACTCCTTCTGGGTGGGCGCAACACTG
AAGCTTTTGAAAATTTTCCAGTACACTAACTTTGAGAAGAATAGGAACTACATCTTATCAACTCAAGATC
GCCTTGTTGGGGGATTTGCTAAATGGCCAGACAGTCATCCAGATGCTTTGCACGCGTACTTCGGGATCTG
CGGCCTGTCACTCATGGAGGAGAGTGGGATTTGTAAAGTGCACCCTGCTCTGAATGTAAGCACACGGACT
TCCGAGCGCCTCCGTGATCTCCATCAAAGCTGGAAGACCAAGGACTCCAAACAGTGCTCAGACAATGTCC
ACATTGCCACCTGA

Translation (377 aa):
MATTEDDRLAGSGEGERLDFLRDRHVRFFQRCLQVLPERYSSLETSRLTIAFFALSGLDMLDSLDVVNKD
DIIEWIYSLQVLPTEDRSNLSRCGFRGSSYLGIPFNPSKNPGAAHPYDSGHIAMTYTGLSCLIILGDDLG
RVDKEACLAGLRALQLEDGSFCAVPEGSENDMRFVYCASCICYMLNNWSGMDMKKAISYIRRSMSYDNGL
AQGAGLESHGGSTFCGIASLCLMGKLEEVFSEKELNRIKRWCIMRQQNGYHGRPNKPVDTCYSFWVGATL
KLLKIFQYTNFEKNRNYILSTQDRLVGGFAKWPDSHPDALHAYFGICGLSLMEESGICKVHPALNVSTRT
SERLRDLHQSWKTKDSKQCSDNVHIAT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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