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Report for CCDS28953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28953.1 Public Mus musculus 17 Dlgap1 23 108 98 CCDS HistoryNCBI Gene:224997Re-query CCDS DB by CCDS ID:28953.1Re-query CCDS DB by GeneID:224997See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28953.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000155016.7 ENSMUSP00000122896.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155016.7Link to Ensembl Protein Viewer:ENSMUSP00000122896.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155016Re-query CCDS DB by Protein ID:ENSMUSP00000122896
Original member Current member NCBI NM_177639.6 NP_808307.2 Accepted alive Link to Nucleotide Sequence:NM_177639.6Link to Protein Sequence:NP_808307.2Re-query CCDS DB by Nucleotide ID:NM_177639Re-query CCDS DB by Protein ID:NP_808307Link to BLAST:NP_808307.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808307.2 992 Q9D415-1 992 100% 0 0

Chromosomal Locations for CCDS 28953.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 70516022 70516996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70593167 70593381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70657454 70657631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70662569 70662809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70718196 70718225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70761075 70761445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70765998 70766089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70786788 70787209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70809188 70809279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70815194 70815346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 70818025 70818234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2979 nt):
ATGAAAGGGTTATCGGGTAGCCGCAGCCACCACCATGGGATCACCTGCGAGGCGGCCTGTGACTCCTTGT
CACACCACTCAGACCACAAGCCGTACCTGCTGAGCCCCGTAGACCACCACCCTGCGGACCATCCCTACTA
CACCCAGCGGAATTCTTTCCAGGCCGAGTGCGTAGGGCCCTTCAGCGACCCGCTGGCCAGCAGCACCTTC
CCGCGCAGGCACTACACCTCGCAGCAGGAGCTGAAGGACGAGAGTGCCCTGGTACCACGCACCCTGGCCA
CCAAGGCGAATCGTCTCCCCACCAACCTGCTGGATCAGTTTGAGAGGCAGCTGCCCCTCAGCCGGGATGG
CTATCACACGCTACAGTACAAGCGCACCGCTGTGGAGCATCGCAGCGATAGCCCCGGCCGCATCCGGCAC
CTGGTCCACTCGGTCCAGAAGCTCTTTACTAAGTCTCATTCCCTGGAGGGGCCATCCAAAGGCAGCGTCA
ACGGGGGCAAGGCTAGCCCTGACGAGTCGCAAACTCTGAGATATGGCAAGCGCAGCAAGAGCAAGGAGAG
GCGATCAGAATCCAAGGCTAGATCCAATGCTTCTAACGCCTCCCCCACCTCTCCCAGTTGGTGGAGTTCA
GATGACAACCTGGATGGTGACATGTGCCTCTACCACACGCCCTCGGGTGTGATGACCATGGGCAGGTGTC
CTGACCGCTCCGCTTCGCAGTACTTCATGGAAGCCTACAACACCATCAGCGAGCAGGCAGTGAAGGCTTC
CCGGAGTAACAATGACATCAAGTGCTCCACCTGTGCCAACCTGCCAGTCACGCTGGATGCCCCGCTTCTG
AAGAAGAGTGCCTGGTCCTCCACTCTCACCGTGAGCAGAGCCCGAGAGGTTTATCAGAAAGCCTCGGTGA
ACATGGATCAGGCCATGGTGAAGTCCGAAGCTTGTCAACAAGAGCGGTCCTGCCAGTACTTACAGGTTCC
CCAGGATGAATGGTCAGGGTACACACCTCGCGGGAAAGACGACGAGATCCCGTGCCGGAGGATGCGCAGT
GGTAGCTACATCAAAGCCATGGGGGATGAAGACAGTGGGGACTCGGACACGAGCCCCAAGCCGTCTCCCA
AGGTGGCTGCAAGAAGAGAAAGCTATCTCAAGGCCACGCAGCCGTCCCTTACAGAGCTCACCACTCTCAA
GATCTCCAATGAACACTCCCCCAAACTCCAGATCCGGAGTCACAGCTACCTGAGGGCCGTAAGTGAAGTC
TCCATCAACAGAAGCCTGGACAGCCTGGACCCTGCAGGCTTGCTCACGTCACCAAAGTTCCGCTCCAGAA
ACGAGAGCTACATGCGCGCCATGAGCACCATAAGTCAGGTGAGCGAGATGGAGGTGAACGGCCAGTTCGA
ATCCGTGTGCGAGTCTGTGTTCAGCGAGCTGGAGTCGCAGGCGGTGGAAGCGCTGGACCTGCCCCTGCCT
GGCTGCTTCCGCATGCGGAGCCACAGCTATGTGCGGGCCATCGAAAAGGGCTGCTCCCAGGACGACGAAT
GCGTGTCGCTGCGGTCGTCCTCCCCTCCACGCACAACCACCACCGTGAGGACCATCCAGAGCAGCACCGG
TGTCATAAAACTGAGTTCTGCCGTTGAAGTGTCATCTTGCATTACAACATATAAGAAGACACCACCTCCA
GTCCCACCCAGAACTACCACGAAACCTTTCATTTCTATCACAGCCCAGAGTAGCACAGAGTCTGCGCAGG
ATGCCTACATGGACGGGCAAGGCCAGCGCGGAGACATGATCAGCCAGTCTGGCCTCAGCAACTCCACCGA
AAGTCTGGACAGTATGAAGGCTCTCACGGCTGCCATCGAGGCTGCAAACGCCCAGATTCACGGCCCAGCA
AGTCAACATATGGGCAGCAATGCTGCTGCTGTCACCACCACCACCACCATAGCCACTGTCACCACCGAGG
ATAGGAAGAAAGACTTTAAGAAAAACCGATGTCTGTCTATTGGGATACAGGTGGACGATGCCGAAGAGCC
GGAGAAAATGGCAGAGAGTAAGACGTCCAATAAGTTCCAGTCCGTGGGAGTGCAAGTAGAAGAAGAGAAG
TGCTTCCGCAGGTTCACTCGGTCCAACAGTGTGACAACTGCAGTACAGGCCGACCTGGACTTCCATGATA
ATCTGGAAAATTCTCTGGAGTCTATAGAGGACAATTCGTGTCCTGGCCCCATGGCCAGACAGTTCTCGCG
GGACGCCAGCACCTCTACCGTCAGTATCCAGGGTTCAGGAAACCACTATCATGCCTGTGCAGCCGATGAC
GACTTTGACACGGATTTTGACCCCTCTATCCTGCCTCCTCCGGACCCCTGGATTGACTCTATCACAGAAG
ACCCTCTGGAGGCCGTTCAAAGGTCCGTGTGCCACCGGGACGGCCACTGGTTCCTGAAGCTTCTCCAGGC
AGAGCGGGACCGCATGGAAGGGTGGTGCAAGCTAATGGAGAGAGAAGAGAGGGAGAACAACCTCCCAGAA
GACATTCTAGGGAAAATCCGAACCGCGGTGGGCAGTGCCCAACTTCTCATGGCGCAGAAATTCTACCAGT
TCAGAGAACTGTGTGAAGAGAACCTGAATCCCAATGCTCACCCGAGACCCACTTCCCAGGACTTGGCGGG
GTTTTGGGACATGCTGCAGTTGTCCATAGAGAATATTAGTATGAAATTTGATGAACTTCATCAGCTAAAG
GCCAATAATTGGAAACAGATGGATCCTCTTGACAAGAAGGAGCGAAGGGCCCCTCCTCCAGTGCCAAAGA
AGCCGGCGAAGGGCCCCGCGCCGCTGATCCGGGAGCGCTCGCTGGAGAGCTCGCAGCGCCAGGAGGCCCG
CAAGCGCCTGATGGCCGCCAAGCGCGCCGCGTCGGTCCGCCAGAACTCGGCCACCGAGAGCGCCGAGAGC
ATCGAGATCTACATCCCCGAGGCGCAGACCCGGCTCTGA

Translation (992 aa):
MKGLSGSRSHHHGITCEAACDSLSHHSDHKPYLLSPVDHHPADHPYYTQRNSFQAECVGPFSDPLASSTF
PRRHYTSQQELKDESALVPRTLATKANRLPTNLLDQFERQLPLSRDGYHTLQYKRTAVEHRSDSPGRIRH
LVHSVQKLFTKSHSLEGPSKGSVNGGKASPDESQTLRYGKRSKSKERRSESKARSNASNASPTSPSWWSS
DDNLDGDMCLYHTPSGVMTMGRCPDRSASQYFMEAYNTISEQAVKASRSNNDIKCSTCANLPVTLDAPLL
KKSAWSSTLTVSRAREVYQKASVNMDQAMVKSEACQQERSCQYLQVPQDEWSGYTPRGKDDEIPCRRMRS
GSYIKAMGDEDSGDSDTSPKPSPKVAARRESYLKATQPSLTELTTLKISNEHSPKLQIRSHSYLRAVSEV
SINRSLDSLDPAGLLTSPKFRSRNESYMRAMSTISQVSEMEVNGQFESVCESVFSELESQAVEALDLPLP
GCFRMRSHSYVRAIEKGCSQDDECVSLRSSSPPRTTTTVRTIQSSTGVIKLSSAVEVSSCITTYKKTPPP
VPPRTTTKPFISITAQSSTESAQDAYMDGQGQRGDMISQSGLSNSTESLDSMKALTAAIEAANAQIHGPA
SQHMGSNAAAVTTTTTIATVTTEDRKKDFKKNRCLSIGIQVDDAEEPEKMAESKTSNKFQSVGVQVEEEK
CFRRFTRSNSVTTAVQADLDFHDNLENSLESIEDNSCPGPMARQFSRDASTSTVSIQGSGNHYHACAADD
DFDTDFDPSILPPPDPWIDSITEDPLEAVQRSVCHRDGHWFLKLLQAERDRMEGWCKLMEREERENNLPE
DILGKIRTAVGSAQLLMAQKFYQFRELCEENLNPNAHPRPTSQDLAGFWDMLQLSIENISMKFDELHQLK
ANNWKQMDPLDKKERRAPPPVPKKPAKGPAPLIRERSLESSQRQEARKRLMAAKRAASVRQNSATESAES
IEIYIPEAQTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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