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Report for CCDS28923.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28923.1 Public Mus musculus 17 Slc25a23 23 108 98 CCDS HistoryNCBI Gene:66972Re-query CCDS DB by CCDS ID:28923.1Re-query CCDS DB by GeneID:66972See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28923.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040280.13 ENSMUSP00000040198.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040280.13Link to Ensembl Protein Viewer:ENSMUSP00000040198.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040280Re-query CCDS DB by Protein ID:ENSMUSP00000040198
Original member Current member NCBI NM_025877.4 NP_080153.2 Accepted alive Link to Nucleotide Sequence:NM_025877.4Link to Protein Sequence:NP_080153.2Re-query CCDS DB by Nucleotide ID:NM_025877Re-query CCDS DB by Protein ID:NP_080153Link to BLAST:NP_080153.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080153.2 467 Q6GQS1 467 100% 0 0

Chromosomal Locations for CCDS 28923.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 57045479 57045663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57047186 57047336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57052682 57052849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57053241 57053348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57053547 57053699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57053784 57053942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57055274 57055385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57056582 57056669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57058108 57058234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 57059521 57059673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1404 nt):
ATGCGGGGGGGCTCAAGCGACGCGGAGCGGCGGCAGCGCTGGGGTCGCCTGTTCGAGGAACTAGACAGCA
ACAAGGACGGCCGCGTGGACGTGCACGAGTTGCGCCAGGGGCTGGCCAGGCTGGGAAGGGGAGATCCGGA
CCGTGCACAGCAGGGTGTCTCCTCTGACTGGGATGCTGATCCTGATGGTGGCCTCAGCCTGGAGGAGTTT
ACTCGCTACCTGCAGGAACGGGAGCAGCGCCTTCTGCTCATGTTTCACAGCCTTGACCGGAACCAAGATG
GTCACATAGATGTCTCTGAGATTCAACAGAGCTTCCGAGCACTAGGTATCTCCATCTCACTGGAGCAAGC
AGAGAAAATCCTACACAGCATGGACCGCGATGGCACCATGACCATTGATTGGCAGGAATGGCGAGACCAC
TTTCTGTTGCACTCTCTGGAGAACGTGGAGGATGTCCTGTATTTCTGGAAGCATTCTACAGTCCTGGACA
TCGGTGAATGCCTGACGGTGCCTGATGAGTTCTCCCAGGAAGAGAAACTTACAGGAATGTGGTGGAAACA
GCTGGTGGCTGGTGCAGTGGCTGGCGCTGTGTCACGGACAGGCACAGCTCCTCTGGACCGACTCAAGGTA
TTCATGCAGGTCCACGCCTCAAAGTCCAACCGGCTTAACATTCTAGGGGGCCTGAGAAACATGATTCAAG
AAGGGGGTGTCTTGTCCCTCTGGCGGGGCAACGGCATCAACGTGCTCAAGATAGCCCCCGAGTCTGCCAT
CAAATTCATGGCTTATGAACAGATCAAGCGGGCCATCCGGGGGCAACAGGAGACACTGCACGTTCAGGAG
CGCTTCGTGGCTGGTTCCCTGGCCGGGGCCACAGCTCAAACCATCATATACCCCATGGAGGTACTAAAGA
CTCGGCTGACTCTACGCAGAACTGGCCAATACAAGGGGCTCCTGGATTGTGCAAAGCGGATCTTAGAACG
TGAAGGGCCCCGCGCCTTCTACCGTGGCTACCTGCCTAATGTGCTGGGCATCATCCCCTATGCAGGAATC
GACCTAGCTGTCTACGAGACCCTGAAGAATCGCTGGCTTCAGCAGTACAGCCACGAATCCGCTAACCCAG
GCATTCTCGTGCTCCTAGGCTGTGGCACCATCTCCAGCACCTGTGGCCAGATTGCCAGTTACCCTCTGGC
ACTGGTCCGTACCCGAATGCAGGCCCAAGCCTCCATTGAGGGTGGCCCGCAGGTCTCCATGGTGGGTCTA
CTTCGACACATCCTGTCCCAGGAGGGTGTATGGGGCCTCTACCGGGGCATTGCCCCCAACTTCATGAAGG
TCATTCCAGCCGTGAGCATCTCCTACGTGGTCTACGAGAACATGAAGCAGGCTCTGGGGGTCACATCCAG
GTGA

Translation (467 aa):
MRGGSSDAERRQRWGRLFEELDSNKDGRVDVHELRQGLARLGRGDPDRAQQGVSSDWDADPDGGLSLEEF
TRYLQEREQRLLLMFHSLDRNQDGHIDVSEIQQSFRALGISISLEQAEKILHSMDRDGTMTIDWQEWRDH
FLLHSLENVEDVLYFWKHSTVLDIGECLTVPDEFSQEEKLTGMWWKQLVAGAVAGAVSRTGTAPLDRLKV
FMQVHASKSNRLNILGGLRNMIQEGGVLSLWRGNGINVLKIAPESAIKFMAYEQIKRAIRGQQETLHVQE
RFVAGSLAGATAQTIIYPMEVLKTRLTLRRTGQYKGLLDCAKRILEREGPRAFYRGYLPNVLGIIPYAGI
DLAVYETLKNRWLQQYSHESANPGILVLLGCGTISSTCGQIASYPLALVRTRMQAQASIEGGPQVSMVGL
LRHILSQEGVWGLYRGIAPNFMKVIPAVSISYVVYENMKQALGVTSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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