NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28907.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28907.2 Public Mus musculus 17 Safb2 23 108 98 CCDS HistoryNCBI Gene:224902Re-query CCDS DB by CCDS ID:28907.2Re-query CCDS DB by GeneID:224902See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 28907.1
The coding region has been updated to shorten the N-terminus to one that is more supported by available conservation data or publications.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 28907.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075510.11 ENSMUSP00000074953.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075510.11Link to Ensembl Protein Viewer:ENSMUSP00000074953.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000075510Re-query CCDS DB by Protein ID:ENSMUSP00000074953
Original member NCBI NM_001029979.3 NP_001025150.2 Updated not alive Link to Nucleotide Sequence:NM_001029979.3Link to Protein Sequence:NP_001025150.2Re-query CCDS DB by Nucleotide ID:NM_001029979Re-query CCDS DB by Protein ID:NP_001025150
Current member NCBI NM_001029979.4 NP_001025150.2 Accepted alive Link to Nucleotide Sequence:NM_001029979.4Link to Protein Sequence:NP_001025150.2Re-query CCDS DB by Nucleotide ID:NM_001029979Re-query CCDS DB by Protein ID:NP_001025150Link to BLAST:NP_001025150.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025150.2 991 Q80YR5 991 100% 0 0

Chromosomal Locations for CCDS 28907.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56563099 56563243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56563362 56563431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56563512 56563624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56564504 56564634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56565219 56565261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56565945 56566082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56566326 56566616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56566879 56567015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56567533 56567624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56568895 56569022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56571210 56571319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56571400 56571549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56574202 56574302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56574903 56574952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56575355 56576012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56576878 56576905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56577843 56577905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56578641 56578844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56578921 56578985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56582984 56583071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56584274 56584444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2976 nt):
ATGGCGGAACCCGGGACCGGGTCGGGCGACCCCGCCTTTGGTCCGGGCGCCTCGGAGAGTGGGACGCGGC
GGCTCAGCGACCTGCGGGTGATCGACCTGAGGGCGGAGCTGAAAAAGCGGAACCTGGATACGGGAGGCAA
CAAGAGCGTGCTGATGGAGCGGCTGAGGAAGGCATTTAAGGAGGAAGGACAAGAACCTGAGGAGGTTGGA
ATCAGCTGGGGAGCTGTGAGCAAGAGGGCTGTAAAGAGAAACACCAAAGGATCCAAGATGGAGGAGGAGG
GCAGCGAGGACAACGGCCTGGAGGAAGATTCCAGATATGGGCAGGATGGGGTTGTGATTCTTCAGAGTTC
ACAAGACAGGGACACCATGGATACAGGTGTGCCAGATGGGATGGAGGCTGAGGACCTCAGTGTGCCCTGC
CTGGGGAAGGCCGACACCGTCAACCAGATTCTTCATGCTTTTGATGACAGTAAAGAGTACGTGGCCGCGC
AGCTGGGACAGCTTCCAGCTCAGCTCCTGAAGCATGCTGTGGATGAGGAGGTCTTCAAGAACACTCTGGA
AGCTTCCGTGTCAGACCTTAAAGTAACTCTGGCTGATGAAGAAGCCCCCATGGAACCAGAAAATGAGAAA
ATACTCGACATTTTGGGGGAAACTTGTAAATCTGAGCCAGTAAAAGAAGAAGGTTCGGAGCTGGAGCAGC
CCTTTGCCCAGGCCACGAGTAGCGTGGGGCCAGACAGGAAGCTGGCGGAGGAAGAGGACCTATTTGAGAG
CTGCGGCCACCCGGAAGAGGAAGAGGAAGAGGAGGAAGAAGATCAGGAAGAGGAGCAGGAGGAGGAGGGA
GATTTAGCTTTGGCCAGCAGCAGCAAGTCTGAGTCTCCAAGCACTCGGTGTCAGTGGAGCGAGGCAGATG
CCCCGTTAGCAGTAGTGAAAAGGGAGCTGGCAGATGCGCCGGGTGGAGGTGGAGGTACTCGGCACAGGCG
GAAGCGCAAGCGAAGGCGGAAGCATCAGGCGCAGGCAGAAGCTCTGGGCACAGGTGGAGGTGCCGGGATG
AACTGCGAGCCTGTAGGGCTAGAGGAGCCAGTTGAACAGAGTAGCACGGCTGCCCAGCTCCCGGAGGCCA
CCAGCCAGGAGCTGGTGCGAGCGCCCACGGCAGCCCTGAGCCCTGAGCCCCAAGATAGCAAAGAAGACGT
GAAGAAGTTTGCTTTTGACGCTTGTAATGACGTCCCTGCGCCTCCTAAAGAGTCCTCAGCCAGTGAGGGC
GCTGATCAGAAAATGAGCTCTGTTAAGGAAGAACAAGATATAAAGCCAGTCATTAAAGATGAAAAAGGCC
GTGCCAGCTGTAGCTCAGGAAGGAACCTGTGGGTCAGTGGGCTGTCCTCCAGCACCCGTGCTGCTGACCT
CAAGAGCCTCTTCAGCAAGCATGGGAAGGTCATCGGAGCCAAGGTGGTCACCAATGCCCGCAGTCCAGGG
GCTCGGTGCTATGGATTTGTGACAATGTCCACGTCAGATGAGGCCACCAAATGCATTAGCCACCTGCACA
GAACTGAACTACATGGGAGGATGATCTCTGTGGAGAAGGCCAAGAATGAACCCTCTGAGAAGAAGTCGTC
AGACAGGAGAGCATGTGACCAAAAGGAGAAGGTGCCAGGGCCGGACAGGCCTCACCCTGTGAAGATCAAG
ACGGAGAAAACTGTGATCAAGAAGGAAGAAAAACTGGAAAGAAAAGAGGAGAAAGGGCCAGAAGACATTA
AAAAGGAGAAGGATCAAGATGAACTCACACCAGGAGCTGCTGGTCATTCTCGAGTCACCAAATCAGGAAG
CAGAGGCATGGAGCGTACAGTCGTGATGGACAAGTCCAAGGGCGAGCCCGTCATCAGTGTGAAGGCCACA
AGCAGGTCAAAGGACAGAAGCTCCAAAAGTCAAGACCGAAAGTCAGAGGGCAGGGAGAAGAGAGACATAC
TGTCATTCGACAAGATCAAGGAGCAGCGGGAGAGGGAGCGCCAGAGGCAGAGGGAGCGTGAAATCCGGGA
GACAGAGCGAAGACGGGAGCGGGAGCAGCGAGAGCGGGAGCAGCGTCTGGATGCCTTCCAGGAGCGACGG
GAGAAGGCTCGCTTGCAGCGGGAACGGATGCAGCTCCAGTGCCAGCGGCAGCGGTTGGAGCGGGAGCGGC
TGGAGCGGGAGAGGCTGGAGCGGGAGCGCATGAGAGTGGAGCGTGAAAGGCGCAAGGAACAGCAGCGCAT
TATGCGTGAGCGGGAGGAGCTGCGGCGGCAGCAAGAACAGCTGCGTGCTGAGCAGGAACGGCGGGCACTG
CGCAGACCCTACGACCTGGATGCTAGGAGAGACGATGGCTACTGGCCAGAAGGGAAGCGTGCAGCCTTAG
AGGACAGATACCGAGACTTTCCACGGCCAGATCACCGCTTCCATGACTTTGATCACCGAGATCGTGGCCA
TTACCAGGAGCATGTCATAGACAGGCGGGATGGGTCCAGAACCAGAGTGGAGGAGCGGGATGGGCAGTAC
TACCCAGATGACCAGCACAGCCATGGAAGGCTCCTAGAGCACCATGCTTGGGATTCCGGAGACGGCTGGC
ATGGCTACAGCTCTGACAAGAAGTTGAATGAAGGCCAAGGGCTACCCCCTCCCCCCAGGGTCAGCCGAGA
GTGGGCGGAGCACAGCTCACAGTTGGAGGAGCAGCAGGTTCCTGTCTGGCACAGTGCTGTGGACACAAAC
ATGACGGGCCATGAACACATACGGTGGCGAGGTGCTGAGCGGGGCCTTGCAGGAGGACCTGGGCATGGGC
ATGTGGCAGCAGGCCGGGGTGGCATGGCTGGGCAAGGCAGCTTTGCACACGGTGGACATTCCCAGGGCTA
TATTGTGCCCAGTGGTAGACTGGAAGGTGGTGGCATGGCCAGCCAGGACCAGGGTGGCCGAGTTCCTAAC
CCCCACCCTCACCCCCACTTCACCCGCCGCTACTGA

Translation (991 aa):
MAEPGTGSGDPAFGPGASESGTRRLSDLRVIDLRAELKKRNLDTGGNKSVLMERLRKAFKEEGQEPEEVG
ISWGAVSKRAVKRNTKGSKMEEEGSEDNGLEEDSRYGQDGVVILQSSQDRDTMDTGVPDGMEAEDLSVPC
LGKADTVNQILHAFDDSKEYVAAQLGQLPAQLLKHAVDEEVFKNTLEASVSDLKVTLADEEAPMEPENEK
ILDILGETCKSEPVKEEGSELEQPFAQATSSVGPDRKLAEEEDLFESCGHPEEEEEEEEEDQEEEQEEEG
DLALASSSKSESPSTRCQWSEADAPLAVVKRELADAPGGGGGTRHRRKRKRRRKHQAQAEALGTGGGAGM
NCEPVGLEEPVEQSSTAAQLPEATSQELVRAPTAALSPEPQDSKEDVKKFAFDACNDVPAPPKESSASEG
ADQKMSSVKEEQDIKPVIKDEKGRASCSSGRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPG
ARCYGFVTMSTSDEATKCISHLHRTELHGRMISVEKAKNEPSEKKSSDRRACDQKEKVPGPDRPHPVKIK
TEKTVIKKEEKLERKEEKGPEDIKKEKDQDELTPGAAGHSRVTKSGSRGMERTVVMDKSKGEPVISVKAT
SRSKDRSSKSQDRKSEGREKRDILSFDKIKEQRERERQRQREREIRETERRREREQREREQRLDAFQERR
EKARLQRERMQLQCQRQRLERERLERERLERERMRVERERRKEQQRIMREREELRRQQEQLRAEQERRAL
RRPYDLDARRDDGYWPEGKRAALEDRYRDFPRPDHRFHDFDHRDRGHYQEHVIDRRDGSRTRVEERDGQY
YPDDQHSHGRLLEHHAWDSGDGWHGYSSDKKLNEGQGLPPPPRVSREWAEHSSQLEEQQVPVWHSAVDTN
MTGHEHIRWRGAERGLAGGPGHGHVAAGRGGMAGQGSFAHGGHSQGYIVPSGRLEGGGMASQDQGGRVPN
PHPHPHFTRRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH