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Report for CCDS28836.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28836.1 Public Mus musculus 17 Ppp2r5d 23 108 98 CCDS HistoryNCBI Gene:21770Re-query CCDS DB by CCDS ID:28836.1Re-query CCDS DB by GeneID:21770See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28836.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002839.8 ENSMUSP00000002839.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002839.8Link to Ensembl Protein Viewer:ENSMUSP00000002839.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002839Re-query CCDS DB by Protein ID:ENSMUSP00000002839
Original member Current member NCBI NM_009358.3 NP_033384.2 Accepted alive Link to Nucleotide Sequence:NM_009358.3Link to Protein Sequence:NP_033384.2Re-query CCDS DB by Nucleotide ID:NM_009358Re-query CCDS DB by Protein ID:NP_033384Link to BLAST:NP_033384.2

Chromosomal Locations for CCDS 28836.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46683989 46684126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46684261 46684377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46684506 46684578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46684665 46684766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46685302 46685429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46685519 46685689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46686054 46686107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46686263 46686431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46686559 46686689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46687034 46687126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46687250 46687360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46687446 46687645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46687837 46688029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46700069 46700146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46704833 46704859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGTCCTATAAACTGAAGAAGGATAAGGAACCCTCCAAGCTTGCCAAAGGCACAGCCAAGCCCAGCAGCT
CAAGCAAGGATGGTGGAGGGGAGAACACCGATGAGGCCCAGCCCCAGCCCCAGTCTCAGTCACCATCATC
CAACAAGCGACCCAGCAACAGTACACCACCCCCAACACAACTCAGCAAAATCAAGTACTCAGGGGGACCC
CAGATTGTCAAGAAAGAACGACGCCAAAGCTCCTTCCCCTTCAACCTCAACAAGAACCGGGAGCTACAAA
AACTTCCTGCCTTGAAAGACTCACCAACCCAGGAACGTGAGGAGCTGTTTATCCAGAAGCTACGCCAGTG
CTGTGTCCTCTTTGACTTCGTGTCAGACCCACTCAGTGACCTCAAATGCAAAGAGGTGAAGCGGGCAGGA
CTCAATGAGATGGTGGAGTATATCACCCACAGCCGTGATGTTGTCACTGAGGCCATCTACCCTGAGGCTG
TCACCATGTTTTCAGTGAATCTCTTCCGGACGCTGCCTCCTTCATCGAATCCCACAGGAGCAGAGTTTGA
CCCTGAGGAAGATGAGCCAACCTTGGAAGCTGCCTGGCCGCATCTCCAGCTCGTGTACGAGTTTTTCTTA
CGTTTCTTGGAGTCTCCAGATTTCCAGCCAAATATAGCCAAGAAGTACATTGACCAGAAGTTTGTACTTG
CTCTCCTGGACCTATTCGATAGTGAAGACCCTAGAGAGCGGGATTTTCTCAAGACCATTTTGCATCGCAT
CTATGGCAAGTTTTTGGGGCTCCGGGCTTATATTCGTAGGCAGATCAACCACATCTTCTACAGGTTTATC
TATGAGACTGAGCATCACAATGGGATTGCGGAGCTGCTGGAGATCCTGGGCAGCATCATCAATGGCTTTG
CCTTGCCCCTTAAGGAAGAACACAAGGTGTTTCTCGTCCGTGTCCTGCTTCCACTTCACAAAGTCAAGTC
TCTGAGTGTATACCACCCTCAGTTGGCGTACTGTGTGGTGCAGTTCCTGGAGAAGGAGAGCAGTCTCACT
GAGCCGGTGATTGTGGGACTTCTCAAGTTTTGGCCTAAGACCCACAGCCCCAAGGAGGTGATGTTTCTGA
ACGAGCTGGAGGAGATTCTAGATGTCATTGAACCCTCGGAGTTCAGTAAAGTCATGGAGCCGCTCTTCCG
CCAGCTTGCCAAATGTGTTTCCAGCCCCCATTTCCAGGTGGCGGAGCGCGCCCTCTACTACTGGAACAAT
GAGTACATCATGAGCCTCATCAGCGACAATGCTGCCCGCATCCTCCCCATCATGTTTCCTGCACTCTATA
GGAACTCCAAAAGCCACTGGAACAAGACAATCCATGGACTCATCTACAATGCCCTGAAGCTCTTCATGGA
GATGAACCAGAAGCTGTTTGACGACTGCACACAGCAGTACAAGGCGGAGAAGCAGAAGGGCAGGTTCCGA
ATGAAGGAGAGAGAGGAGATGTGGCAGAAGATCGAGGAGCTGGCCCGGCTCAATCCCCAGTACCCTATGT
TTCGGGCTCCTCCGCCACTGCCCCCTGTGTACTCCATGGAGACAGAGACGCCCACAGCAGAGGACATTCA
GCTCCTGAAGAGGACGGTGGAGACAGAGGCCGTGCAGATGCTGAAGGACATCAAGAAGGACAAAGTGCTG
CTCCGGAGGAAGTCAGAGCTGCCACAGGACGTGTACACCATCAAGGCACTAGAGGCGCACAAGCGGGCAG
AAGAGTTCCTGACTGCCAGCCAGGAGGCCCTCTGA

Translation (594 aa):
MSYKLKKDKEPSKLAKGTAKPSSSSKDGGGENTDEAQPQPQSQSPSSNKRPSNSTPPPTQLSKIKYSGGP
QIVKKERRQSSFPFNLNKNRELQKLPALKDSPTQEREELFIQKLRQCCVLFDFVSDPLSDLKCKEVKRAG
LNEMVEYITHSRDVVTEAIYPEAVTMFSVNLFRTLPPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFL
RFLESPDFQPNIAKKYIDQKFVLALLDLFDSEDPRERDFLKTILHRIYGKFLGLRAYIRRQINHIFYRFI
YETEHHNGIAELLEILGSIINGFALPLKEEHKVFLVRVLLPLHKVKSLSVYHPQLAYCVVQFLEKESSLT
EPVIVGLLKFWPKTHSPKEVMFLNELEEILDVIEPSEFSKVMEPLFRQLAKCVSSPHFQVAERALYYWNN
EYIMSLISDNAARILPIMFPALYRNSKSHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQYKAEKQKGRFR
MKEREEMWQKIEELARLNPQYPMFRAPPPLPPVYSMETETPTAEDIQLLKRTVETEAVQMLKDIKKDKVL
LRRKSELPQDVYTIKALEAHKRAEEFLTASQEAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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