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Report for CCDS28728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28728.1 Public Mus musculus 17 Trim31 23 108 98 CCDS HistoryNCBI Gene:224762Re-query CCDS DB by CCDS ID:28728.1Re-query CCDS DB by GeneID:224762See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078438.4 ENSMUSP00000077535.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078438.4Link to Ensembl Protein Viewer:ENSMUSP00000077535.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000078438Re-query CCDS DB by Protein ID:ENSMUSP00000077535
Original member Current member NCBI NM_146077.2 NP_666189.1 Accepted alive Link to Nucleotide Sequence:NM_146077.2Link to Protein Sequence:NP_666189.1Re-query CCDS DB by Nucleotide ID:NM_146077Re-query CCDS DB by Protein ID:NP_666189Link to BLAST:NP_666189.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666189.1 507 Q8R0K2 507 100% 0 0

Chromosomal Locations for CCDS 28728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36898354 36898767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36899892 36899987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36901649 36901879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36905414 36905436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36905907 36906022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36907260 36907334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36907780 36907821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36909191 36909717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGGCAGGCCAACCTCTGGCCTGCCAACTGCAGGAGGAGGTGACCTGCCCCATCTGCATGGAAATTCTAC
AAGATCCTGTCACCATTGACTGTGGGCACAACTTCTGCCTGCAGTGTATCAGTCAGGTTGGAAAAACGTC
AGAAAAGATCCAATGTCCTCTCTGCAAACTCTCTGTGAATAAGAATACGTTCAGGCCCAATAAGCTGCTG
GCTAGTCTTGCAGAGAAGATCCAAAGTATGGATCCTGCTGACATCCAAGCAGAAAAGGAAGACTCAAGAT
GTCAGAGGCACAAGGAAAAGCTACATTACTTCTGCGAGCAGGATGGGGCATTCCTCTGTGTGGTGTGTCG
TGACTCCAAGGACCACAAGTCTCACAATGTCACCTTGATAGATGAGGCTGCCCAGAACTACAAGGTGCAG
ATTGAGTCACAGGCCCAAGATTTGGGGCAAAAGGACAAGAAAATAATTGAAGAGAAAAAACAAGGTGAAG
GGGCAATCTGGGCGTTCAGGGCCCAGGTGGATCTAGAGAAACTAAAGATCCATGAGGAATTCAAGCTCCT
GCGCCAGAGACTAGATGAGGAAGAGAGTTTCCTCCTGTCCAGGCTGGACTGGCTGGAGCAGCAGGGAGCC
AAGCAGTTGAGACAATATGTCACTGTGACAGAGAAGCAGCTGAACTCTCTAAGGAAGCTCACTAAATCCT
TGAAAATAAGGCTGCAATCATCATCCATGGAGCTACTAAAGGACATTAAAGACGCCTTGAGCAGGGGTAA
GGAATTTCAGTTTCTCAACCCAAACCCAGTTCCTGAGGACCTGGAGAAAAAATGCAGTGAAGCAAAAGCA
AGGCATGAGTCCATCATAAAAACCCTGACAGAACTCAAAGACGATATGAATGCCGAAGGGAAGAGAGATA
AAAGCGCATTCATGAACAGCCTGAATAAAGAAGAAAAGGAGAGCTGGAGCCTGTTACAGAAGAATAATTC
AGTGTTGCCCACCTCAGTCCCTGTGACCCTGGACAAGTCCTCAGCTGACCCAGACCTCACCTTTTCTCAG
GATCTAAAGAAAGTGACCTTGTATATTGTAGCTGGAAAAGCTTCCAATAGGCAGGCAAAACCTCGACCAT
TCTACCCTTTCCACTGTGTGAGGGGTTCCCCAGGCCTCTCCTCAGGCCGCCAGGTGTGGGAGGCAGAAAT
CCGGGGGCCCTCAGGTGGGGCATGCATTGTGGGCGTGGTTACAGAGTTGGCGCGAGGGGCCCAGAGTCAA
ACCGTGAGCGCGCAGAGCTACATATGGGCACTGCGGATCTCGCCCTCTGGATGCCAGCCATTCACCAATT
GTAAAGCCCAGGAGTACCTCCAGGTCTGTCTTAAGAAAGTGGGTGTCTATGTGAATCATGACTGTGGAGA
GGTCGTCTTCTATGATGCCATCACTAGCAAACACATCTATACTTTCCAAACTTCCTTTGACGGGAAGGTC
TTCCCCCTTTTCGGGCTCCAAGTTGCCTGCAGCCATATCACCCTGAGCCCTTAG

Translation (507 aa):
MAGQPLACQLQEEVTCPICMEILQDPVTIDCGHNFCLQCISQVGKTSEKIQCPLCKLSVNKNTFRPNKLL
ASLAEKIQSMDPADIQAEKEDSRCQRHKEKLHYFCEQDGAFLCVVCRDSKDHKSHNVTLIDEAAQNYKVQ
IESQAQDLGQKDKKIIEEKKQGEGAIWAFRAQVDLEKLKIHEEFKLLRQRLDEEESFLLSRLDWLEQQGA
KQLRQYVTVTEKQLNSLRKLTKSLKIRLQSSSMELLKDIKDALSRGKEFQFLNPNPVPEDLEKKCSEAKA
RHESIIKTLTELKDDMNAEGKRDKSAFMNSLNKEEKESWSLLQKNNSVLPTSVPVTLDKSSADPDLTFSQ
DLKKVTLYIVAGKASNRQAKPRPFYPFHCVRGSPGLSSGRQVWEAEIRGPSGGACIVGVVTELARGAQSQ
TVSAQSYIWALRISPSGCQPFTNCKAQEYLQVCLKKVGVYVNHDCGEVVFYDAITSKHIYTFQTSFDGKV
FPLFGLQVACSHITLSP


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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