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Report for CCDS2867.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2867.1 Public Homo sapiens 3 SFMBT1 24 110 108 CCDS HistoryNCBI Gene:51460Re-query CCDS DB by CCDS ID:2867.1Re-query CCDS DB by GeneID:51460See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2867.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394752.8 ENSP00000378235.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394752.8Link to Ensembl Protein Viewer:ENSP00000378235.2Re-query CCDS DB by Nucleotide ID:ENST00000394752Re-query CCDS DB by Protein ID:ENSP00000378235
Original member Current member NCBI NM_016329.4 NP_057413.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016329.4Link to Protein Sequence:NP_057413.2Re-query CCDS DB by Nucleotide ID:NM_016329Re-query CCDS DB by Protein ID:NP_057413Link to BLAST:NP_057413.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057413.2 866 Q9UHJ3-1 866 100% 0 0

Chromosomal Locations for CCDS 2867.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 52905136 52905276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52906113 52906241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52907069 52907314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52907555 52907733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52911003 52911178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52912538 52912647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52913478 52913617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52916150 52916214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52918484 52918526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52920537 52920650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52921705 52921831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52926031 52926113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52928191 52928341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52930329 52930430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52930941 52931035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52932062 52932308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52934813 52934901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52943353 52943593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52954317 52954411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 52969101 52969128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2601 nt):
ATGAACGGGGAGCAGCAGCTTGATGCAGATGCCGGCTCTGGTATGGAAGAGGTAGAATTAAGCTGGGAAG
ATTATCTAGAAGAAACAGGGTCCACAGCAGTTCCCTATGGGTCTTTTAAACATGTGGACACACGTTTGCA
AAATGGATTTGCTCCTGGGATGAAGCTGGAGGTGGCTGTGAGAACAGATCCTGAGACCTACTGGGTTGCC
ACCGTTATCACTACCTGTGAGCAGTTGCTCCTTCTCCGCTATGATGGCTATGGGGAGGATCGGAGAGCAG
ATTTCTGGTGTGACATCAGGAAGGCTGATCTCTACCCCATTGGGTGGTGTGAGCAGAATAAGAAGACCCT
TGAAGCCCCAGAAGGCATCAGAGATAAAGTATCTGACTGGGATGAGTTTCTGCGGCAGACCCTGATAGGA
GCATGTAGTCCTCCTGTTCCGCTGCTAGAGGGCCTCCGTAATGGGAGGAATCCTTTAGATCTCATTGCTC
CAGGATCCAGACTAGAATGTCAAGCTTTCCAGGACTCTTTAAGCACTTGGATTGTTACTGTAGTAGAAAA
CATTGGAGGAAGGCTGAAGCTACGTTATGAAGGACTTGAAAGTTCTGACAATTATGAACATTGGTTGTAT
TACTTGGATCCATTTCTTCATCACGTTGGTTGGGCTGCTCAACAGGGATATGAGCTTCAGCCCCCTTCAG
CCATTAGACATCTAAAAAATGAAGCTGAGTGGCAAGAGATTTTGGCCAAAGTGAAAGAGGAAGAGGAAGA
GCCATTACCATCTTACTTATTTAAGGACAAACAAGTTATTGGCATTCATACATTCTCTGTAAACATGAAA
TTGGAAGCTGTAGACCCCTGGTCTCCTTTTGGGATCTCTCCTGCTACAGTTGTTAAGGTTTTTGATGAGA
AGTACTTTCTGGTGGAAATGGATGACTTGCGTCCTGAGAACCACGCACGGCGATCCTTTGTGTGCCACGC
CGACAGTCCTGGCATCTTCCCTGTGCAGTGGAGTCTGAAGAATGGCCTACACATCAGCCCCCCTCCAGGC
TACCCAAGCCAGGACTTTGACTGGGCTGACTACCTCAAACAGTGTGGTGCTGAAGCTGCTCCCCAGAGGT
GCTTCCCTCCGTTAATTTCTGAACATGAATTTAAGGAGAACATGAAGCTCGAGGCGGTGAACCCCATTCT
CCCTGAAGAAGTGTGTGTTGCTACCATCACTGCAGTGAGAGGCTCCTACCTGTGGCTCCAGCTGGAGGGT
TCTAAGAAGCCTATACCTGAATGTATTGTGAGTGTGGAATCCATGGATATATTTCCTTTGGGCTGGTGTG
AAACCAACGGCCACCCCCTCAGCACTCCTCGCCGAGCACGAGTATATAAACAGAGGAAAATTGCAGTGGT
TCAGCCAGAAAAACAAGTACCATCCTCGAGGACTGTCCACGAGGGCCTGAGGAATCAGGAGCTGAACTCC
ACAGAGTCAGTTATGATTAATGGAAAATATTGCTGTCCAAAGATATACTTCAACCACCGTTGCTTCTCAG
GGCCATATCTTAACAAAGGAAGAATTGCTGAGCTGCCTCAATGTGTAGGACCTGGGAACTGTGTTCTGGT
CCTTAGAGAGGTCCTCACTTTACTTATCAATGCAGCCTACAAACCCAGCCGTGTCCTTCGGGAGCTCCAG
CTGGACAAAGACTCTGTGTGGCACGGATGTGGGGAAGTCCTAAAAGCCAAATATAAAGGAAAGAGTTATC
GGGCTACTGTTGAGATAGTGAAAACAGCAGATCGGGTGACTGAATTCTGCCGGCAAACCTGTATCAAACT
GGAATGCTGTCCTAACCTCTTCGGTCCACGGATGGTTCTGGATAAGTGTTCTGAGAACTGTTCTGTACTT
ACAAAGACCAAATACACACACTATTACGGAAAGAAGAAAAATAAAAGAATTGGGAGGCCACCTGGTGGGC
ATAGTAACTTAGCTTGTGCCCTGAAAAAAGCCAGTAAGAGGAGAAAGAGGCGGAAAAATGTTTTTGTTCA
TAAGAAGAAACGCTCCTCTGCATCTGTTGATAATACCCCAGCGGGCTCTCCCCAGGGAAGTGGGGGTGAA
GATGAGGATGACCCAGATGAAGGGGATGATGATTCCCTAAGTGAAGGCAGTACATCCGAGCAGCAGGATG
AGCTACAGGAAGAATCAGAAATGTCAGAAAAAAAGTCATGCTCCTCTTCTCCCACCCAAAGTGAGATATC
CACATCGCTGCCTCCAGATAGACAAAGGAGAAAAAGGGAGCTTCGCACCTTTTCATTTTCTGACGATGAA
AATAAACCTCCTTCACCAAAGGAAATAAGGATCGAAGTTGCTGAAAGGCTTCACCTGGACAGTAACCCCT
TGAAGTGGAGTGTGGCAGACGTTGTGCGGTTCATCAGATCCACTGACTGTGCTCCATTAGCAAGAATATT
CCTAGACCAGGAAATTGATGGGCAGGCCCTGTTGCTCCTTACCCTTCCCACTGTTCAAGAATGCATGGAC
TTAAAATTGGGCCCTGCCATCAAACTTTGCCATCACATAGAGAGGATCAAGTTTGCTTTTTATGAGCAGT
TTGCCAACTGA

Translation (866 aa):
MNGEQQLDADAGSGMEEVELSWEDYLEETGSTAVPYGSFKHVDTRLQNGFAPGMKLEVAVRTDPETYWVA
TVITTCEQLLLLRYDGYGEDRRADFWCDIRKADLYPIGWCEQNKKTLEAPEGIRDKVSDWDEFLRQTLIG
ACSPPVPLLEGLRNGRNPLDLIAPGSRLECQAFQDSLSTWIVTVVENIGGRLKLRYEGLESSDNYEHWLY
YLDPFLHHVGWAAQQGYELQPPSAIRHLKNEAEWQEILAKVKEEEEEPLPSYLFKDKQVIGIHTFSVNMK
LEAVDPWSPFGISPATVVKVFDEKYFLVEMDDLRPENHARRSFVCHADSPGIFPVQWSLKNGLHISPPPG
YPSQDFDWADYLKQCGAEAAPQRCFPPLISEHEFKENMKLEAVNPILPEEVCVATITAVRGSYLWLQLEG
SKKPIPECIVSVESMDIFPLGWCETNGHPLSTPRRARVYKQRKIAVVQPEKQVPSSRTVHEGLRNQELNS
TESVMINGKYCCPKIYFNHRCFSGPYLNKGRIAELPQCVGPGNCVLVLREVLTLLINAAYKPSRVLRELQ
LDKDSVWHGCGEVLKAKYKGKSYRATVEIVKTADRVTEFCRQTCIKLECCPNLFGPRMVLDKCSENCSVL
TKTKYTHYYGKKKNKRIGRPPGGHSNLACALKKASKRRKRRKNVFVHKKKRSSASVDNTPAGSPQGSGGE
DEDDPDEGDDDSLSEGSTSEQQDELQEESEMSEKKSCSSSPTQSEISTSLPPDRQRRKRELRTFSFSDDE
NKPPSPKEIRIEVAERLHLDSNPLKWSVADVVRFIRSTDCAPLARIFLDQEIDGQALLLLTLPTVQECMD
LKLGPAIKLCHHIERIKFAFYEQFAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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