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Report for CCDS28664.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28664.1 Public Mus musculus 17 C2 23 108 98 CCDS HistoryNCBI Gene:12263Re-query CCDS DB by CCDS ID:28664.1Re-query CCDS DB by GeneID:12263See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28664.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025230.14 ENSMUSP00000025230.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025230.14Link to Ensembl Protein Viewer:ENSMUSP00000025230.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000025230Re-query CCDS DB by Protein ID:ENSMUSP00000025230
Original member NCBI NM_013484.2 NP_038512.2 Updated not alive Link to Nucleotide Sequence:NM_013484.2Link to Protein Sequence:NP_038512.2Re-query CCDS DB by Nucleotide ID:NM_013484Re-query CCDS DB by Protein ID:NP_038512
Current member NCBI NM_013484.3 NP_038512.2 Accepted alive Link to Nucleotide Sequence:NM_013484.3Link to Protein Sequence:NP_038512.2Re-query CCDS DB by Nucleotide ID:NM_013484Re-query CCDS DB by Protein ID:NP_038512Link to BLAST:NP_038512.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038512.2 760 P21180-1 760 100% 0 0

Chromosomal Locations for CCDS 28664.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34862858 34863031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34863179 34863228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34863345 34863474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34863624 34863715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34863863 34863939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34864045 34864210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34864308 34864425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34864512 34864606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34864729 34864869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34866518 34866607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34872367 34872507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34873462 34873600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34875888 34876021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34876154 34876255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34876334 34876510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34879882 34880067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34881572 34881796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34881950 34881995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2283 nt):
ATGGCCCCTCTGCTGGCTCTCTTCTACCTGCTGCAGCTGGGCCCAGGCCTGGCTGCTCTCTTCTGCAACC
AGAATGTCAATATCACCGGTGGTAATTTCACCCTCAGCCATGGCTGGGCCCCTGGGAGCCTCCTCATCTA
CTCCTGCCCCCTGGGCAGGTACCCGTCCCCAGCCTGGAGGAAATGTCAGAGCAACGGACAGTGGCTGACA
CCAAGGTCTAGCTCACATCACACCCTGCGATCCTCTCGGATGGTTAAAGCAGTCTGCAAACCGGTTCGAT
GCCTAGCTCCTTCATCCTTTGAAAATGGCATCTATTTCCCTCGGCTGGTGTCCTACCCTGTGGGTAGCAA
CGTGAGCTTTGAGTGTGAGCAAGACTTCACCTTGCGGGGCTCACCTGTGCGGTACTGTCGCCCCAACGGC
CTGTGGGATGGAGAGACGGCTGTGTGTGACAATGGGGCTAGCCACTGCCCCAACCCTGGCATCTCAGTGG
GCACAGCTCGGACAGGCTTGAACTTTGACCTTGGGGACAAGGTCAGGTACCGCTGCTCCTCCTCAAATAT
GGTATTGACTGGCTCTGCAGAGCGGGAGTGTCAGAGCAATGGAGTGTGGAGTGGGTCGGAACCCATTTGC
CGACAGCCTTACTCTTACGACTTCCCTGAGGATGTAGCATCTGCCCTAGACACCTCCCTCACCAACCTGC
TTGGAGCCACCAATCCCACCCAGAACCTTCTGACAAAAAGTTTGGGCCGTAAGATCATAATCCAGCGCTC
GGGTCACCTGAACCTCTATTTGCTGCTTGATGCTTCTCAGAGTGTGACAGAAAAAGACTTTGACATCTTC
AAGAAGAGTGCCGAACTCATGGTGGAGAGGATCTTCAGCTTTGAGGTAAATGTCAGCGTAGCTATCATCA
CCTTTGCCTCTCAGCCCAAAACCATCATGTCGATCCTGAGTGAGAGATCCCAGGATGTGACGGAGGTGAT
CACCAGTCTGGACTCTGCCAGCTACAAAGATCACGAAAATGCCACTGGCACTAACACTTATGAGGTTCTC
ATCCGCGTTTACTCCATGATGCAAAGCCAGATGGATCGCCTGGGCATGGAGACCTCTGCCTGGAAGGAAA
TCCGTCACACCATCATCCTTCTGACTGACGGAAAGTCCAACATGGGTGACTCTCCCAAGAAAGCAGTCAC
CAGAATCAGAGAGCTCCTGAGCATCGAACAGAACAGAGATGACTACCTGGACATCTATGCTATTGGGGTG
GGCAAGCTGGATGTGGACTGGAAAGAACTGAATGAGCTGGGTTCCAAGAAGGATGGCGAGAGGCATGCCT
TCATCTTGCAGGATGCAAAGGCCTTGCAACAGATCTTTGAGCACATGTTGGATGTCTCTAAGCTCACAGA
TACCATCTGTGGGGTGGGGAACATGTCCGCCAATGCCTCTGACCAGGAGAGGACACCTTGGCAAGTCACC
TTTAAGCCCAAGAGCAAGGAAACTTGCCAGGGATCACTCATCTCTGATCAGTGGGTGCTGACAGCAGCTC
ACTGCTTCCATGACATTCAGATGGAGGACCACCACCTGTGGAGGGTCAATGTAGGTGATCCCACCTCTCA
GCATGGCAAAGAATTTCTTGTGGAGGACGTGATAATTGCCCCAGGGTTTAATGTCCATGCAAAGCGGAAG
CAGGGCATCTCAGAGTTCTATGCTGATGACATTGCCTTGCTGAAGCTATCTCGGAAAGTGAAAATGTCCA
CCCATGCCAGACCCATCTGCCTTCCTTGCACTGTGGGAGCCAACATGGCTCTGCGGAGATCCCCAGGTAG
TACCTGTAAAGATCATGAGACAGAACTTCTGTCACAGCAGAAAGTTCCTGCACATTTTGTAGCTTTGAAT
GGGAACAGACTCAACATCAACCTCAGGACAGGACCTGAGTGGACAAGGTGTATCCAGGCTGTCTCCCAAA
ACAAAAACATCTTCCCCAGCTTGACAAACGTTAGCGAGGTGGTGACAGACCAGTTCCTATGCAGTGGGAT
GGAGGAGGAAGATGACAATCCTTGCAAAGGAGAATCTGGGGGAGCCGTTTTCCTTGGACGGAGATACAGG
TTCTTCCAGGTGGGCCTGGTGAGTTGGGGTCTTTTTGACCCTTGTCATGGTTCCTCCAACAAAAACTTGC
GCAAGAAACCTCCACGTGGTGTTCTGCCAAGGGACTTCCACATTAGTCTTTTCCGCCTGCAGCCCTGGCT
GAGGCAGCACCTGGATGGTGTCCTGGACTTTCTGCCACTTTAA

Translation (760 aa):
MAPLLALFYLLQLGPGLAALFCNQNVNITGGNFTLSHGWAPGSLLIYSCPLGRYPSPAWRKCQSNGQWLT
PRSSSHHTLRSSRMVKAVCKPVRCLAPSSFENGIYFPRLVSYPVGSNVSFECEQDFTLRGSPVRYCRPNG
LWDGETAVCDNGASHCPNPGISVGTARTGLNFDLGDKVRYRCSSSNMVLTGSAERECQSNGVWSGSEPIC
RQPYSYDFPEDVASALDTSLTNLLGATNPTQNLLTKSLGRKIIIQRSGHLNLYLLLDASQSVTEKDFDIF
KKSAELMVERIFSFEVNVSVAIITFASQPKTIMSILSERSQDVTEVITSLDSASYKDHENATGTNTYEVL
IRVYSMMQSQMDRLGMETSAWKEIRHTIILLTDGKSNMGDSPKKAVTRIRELLSIEQNRDDYLDIYAIGV
GKLDVDWKELNELGSKKDGERHAFILQDAKALQQIFEHMLDVSKLTDTICGVGNMSANASDQERTPWQVT
FKPKSKETCQGSLISDQWVLTAAHCFHDIQMEDHHLWRVNVGDPTSQHGKEFLVEDVIIAPGFNVHAKRK
QGISEFYADDIALLKLSRKVKMSTHARPICLPCTVGANMALRRSPGSTCKDHETELLSQQKVPAHFVALN
GNRLNINLRTGPEWTRCIQAVSQNKNIFPSLTNVSEVVTDQFLCSGMEEEDDNPCKGESGGAVFLGRRYR
FFQVGLVSWGLFDPCHGSSNKNLRKKPPRGVLPRDFHISLFRLQPWLRQHLDGVLDFLPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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