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Report for CCDS28643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28643.1 Public Mus musculus 17 Tap1 23 108 98 CCDS HistoryNCBI Gene:21354Re-query CCDS DB by CCDS ID:28643.1Re-query CCDS DB by GeneID:21354See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170086.7 ENSMUSP00000128401.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170086.7Link to Ensembl Protein Viewer:ENSMUSP00000128401.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170086Re-query CCDS DB by Protein ID:ENSMUSP00000128401
Original member Current member NCBI NM_013683.2 NP_038711.2 Accepted alive Link to Nucleotide Sequence:NM_013683.2Link to Protein Sequence:NP_038711.2Re-query CCDS DB by Nucleotide ID:NM_013683Re-query CCDS DB by Protein ID:NP_038711Link to BLAST:NP_038711.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038711.2 724 P21958 724 100% 0 0

Chromosomal Locations for CCDS 28643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 34187880 34188405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34189178 34189292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34189430 34189560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34190563 34190768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34191329 34191526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34192837 34192965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34193128 34193316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34193485 34193658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34193881 34194043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34194844 34194980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 34196568 34196774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2175 nt):
ATGGCTGCGCACGTCTGGCTGGCGGCCGCCCTGCTCCTTCTGGTGGACTGGCTGCTGCTGCGGCCCATGC
TCCCGGGAATCTTCTCCCTGTTGGTTCCCGAGGTGCCGCTGCTCCGGGTCTGGGTGGTGGGCCTGAGTCG
CTGGGCCATCCTAGGACTAGGGGTCCGCGGGGTCCTCGGGGTCACCGCAGGAGCCCATGGCTGGCTGGCT
GCTTTGCAGCCGCTGGTGGCCGCACTGAGTTTGGCCCTGCCTGGACTTGCCTTGTTCCGAGAGCTGGCCG
CCTGGGGAACACTCCGGGAGGGTGACAGCGCTGGATTACTGTACTGGAACAGTCGTCCAGATGCCTTCGC
TATCAGTTATGTGGCAGCATTGCCCGCAGCCGCCCTGTGGCACAAGTTGGGGAGCCTCTGGGCGCCCAGC
GGCAACAGGGACGCTGGAGACATGCTGTGTCGGATGCTGGGCTTCCTGGGCCCTAAGAAGAGACGTCTCT
ACCTGGTTCTGGTTCTCTTGATTCTCTCTTGCCTTGGGGAAATGGCCATTCCCTTCTTCACGGGCCGCAT
CACTGACTGGATTCTTCAGGATAAGACAGTTCCTAGCTTCACCCGCAACATATGGCTCATGTCCATTCTC
ACCATAGCCAGCACAGCGCTGGAGTTTGCAAGTGATGGAATCTACAACATCACCATGGGACACATGCACG
GCCGTGTGCACAGAGAGGTGTTTCGGGCCGTCCTTCGCCAGGAGACAGGGTTTTTCCTGAAGAACCCAGC
AGGTTCCATCACATCTCGGGTGACTGAGGACACAGCCAACGTGTGCGAGTCCATTAGTGGCACGCTGAGC
CTGCTGCTGTGGTACCTGGGGCGAGCCCTGTGTCTCTTGGTGTTCATGTTTTGGGGGTCACCGTACCTCA
CTCTGGTCACCCTGATCAACCTGCCCCTGCTTTTTCTTTTGCCTAAGAAGCTGGGAAAAGTGCATCAGTC
ACTGGCAGTGAAGGTGCAGGAGTCTCTAGCAAAGTCCACGCAGGTGGCCCTTGAGGCCTTATCGGCGATG
CCTACTGTGCGGAGCTTTGCCAACGAGGAGGGTGAGGCCCAGAAGTTCAGGCAGAAGTTGGAAGAAATGA
AGACTCTAAACAAGAAGGAGGCCTTGGCTTACGTGGCTGAAGTCTGGACCACGAGTGTCTCGGGAATGCT
GCTGAAGGTGGGAATTCTGTACCTGGGCGGGCAGCTGGTGATCAGAGGGGCTGTCAGCAGCGGCAACCTT
GTCTCATTCGTTCTCTACCAGCTTCAGTTCACCCAGGCTGTTCAGGTCCTGCTCTCCCTCTACCCCTCCA
TGCAGAAGGCTGTGGGCTCCTCAGAGAAAATATTCGAATACTTGGACCGGACTCCTTGCTCTCCACTCAG
TGGCTCGTTGGCACCCTCAAACATGAAAGGCCTTGTGGAGTTCCAAGATGTCTCTTTTGCCTACCCAAAC
CAGCCCAAAGTCCAGGTGCTTCAGGGGCTGACGTTCACCCTGCATCCTGGAACGGTGACAGCGTTGGTGG
GACCCAATGGATCAGGGAAGAGCACCGTGGCTGCCCTGCTGCAGAACCTGTACCAGCCCACCGGGGGCCA
GCTGCTGCTGGATGGCCAGTGCCTGGTCCAGTATGATCACCATTACCTGCACACTCAGGTGGCCGCAGTG
GGACAAGAGCCGCTGCTATTTGGAAGAAGCTTTCGAGAAAATATTGCGTATGGCCTGAACCGGACTCCAA
CCATGGAGGAAATCACAGCTGTGGCCGTGGAGTCTGGAGCCCACGATTTCATCTCTGGGTTCCCTCAGGG
CTATGACACAGAGGTAGGTGAGACTGGGAACCAGCTGTCAGGAGGTCAGCGACAGGCAGTGGCCTTGGCC
CGAGCCTTGATCCGGAAGCCACTCCTGCTTATCTTGGATGATGCCACCAGTGCCCTGGATGCTGGCAACC
AGCTACGGGTCCAGCGGCTCCTGTATGAGAGCCCCAAGCGGGCTTCTCGGACGGTTCTTCTTATCACCCA
GCAGCTCAGCCTGGCAGAGCAGGCCCACCACATCCTCTTTCTCAGAGAAGGCTCTGTCGGCGAGCAGGGC
ACCCACCTGCAGCTCATGAAGAGAGGAGGGTGCTACCGGGCCATGGTAGAGGCTCTTGCGGCTCCTGCAG
ACTGA

Translation (724 aa):
MAAHVWLAAALLLLVDWLLLRPMLPGIFSLLVPEVPLLRVWVVGLSRWAILGLGVRGVLGVTAGAHGWLA
ALQPLVAALSLALPGLALFRELAAWGTLREGDSAGLLYWNSRPDAFAISYVAALPAAALWHKLGSLWAPS
GNRDAGDMLCRMLGFLGPKKRRLYLVLVLLILSCLGEMAIPFFTGRITDWILQDKTVPSFTRNIWLMSIL
TIASTALEFASDGIYNITMGHMHGRVHREVFRAVLRQETGFFLKNPAGSITSRVTEDTANVCESISGTLS
LLLWYLGRALCLLVFMFWGSPYLTLVTLINLPLLFLLPKKLGKVHQSLAVKVQESLAKSTQVALEALSAM
PTVRSFANEEGEAQKFRQKLEEMKTLNKKEALAYVAEVWTTSVSGMLLKVGILYLGGQLVIRGAVSSGNL
VSFVLYQLQFTQAVQVLLSLYPSMQKAVGSSEKIFEYLDRTPCSPLSGSLAPSNMKGLVEFQDVSFAYPN
QPKVQVLQGLTFTLHPGTVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGQCLVQYDHHYLHTQVAAV
GQEPLLFGRSFRENIAYGLNRTPTMEEITAVAVESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALA
RALIRKPLLLILDDATSALDAGNQLRVQRLLYESPKRASRTVLLITQQLSLAEQAHHILFLREGSVGEQG
THLQLMKRGGCYRAMVEALAAPAD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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