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Report for CCDS28588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28588.1 Public Mus musculus 17 Kctd20 23 108 98 CCDS HistoryNCBI Gene:66989Re-query CCDS DB by CCDS ID:28588.1Re-query CCDS DB by GeneID:66989See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28588.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168507.1 ENSMUSP00000131435.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168507.1Link to Ensembl Protein Viewer:ENSMUSP00000131435.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168507Re-query CCDS DB by Protein ID:ENSMUSP00000131435
Original member Current member EBI ENSMUST00000233197.1 ENSMUSP00000156936.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233197.1Link to Ensembl Protein Viewer:ENSMUSP00000156936.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233197Re-query CCDS DB by Protein ID:ENSMUSP00000156936
Original member NCBI NM_001356300.1 NP_001343229.1 Updated not alive Link to Nucleotide Sequence:NM_001356300.1Link to Protein Sequence:NP_001343229.1Re-query CCDS DB by Nucleotide ID:NM_001356300Re-query CCDS DB by Protein ID:NP_001343229
Current member NCBI NM_001356300.2 NP_001343229.1 Accepted alive Link to Nucleotide Sequence:NM_001356300.2Link to Protein Sequence:NP_001343229.1Re-query CCDS DB by Nucleotide ID:NM_001356300Re-query CCDS DB by Protein ID:NP_001343229Link to BLAST:NP_001343229.1
Original member NCBI NM_025888.6 NP_080164.2 Updated not alive Link to Nucleotide Sequence:NM_025888.6Link to Protein Sequence:NP_080164.2Re-query CCDS DB by Nucleotide ID:NM_025888Re-query CCDS DB by Protein ID:NP_080164
Current member NCBI NM_025888.7 NP_080164.2 Accepted alive Link to Nucleotide Sequence:NM_025888.7Link to Protein Sequence:NP_080164.2Re-query CCDS DB by Nucleotide ID:NM_025888Re-query CCDS DB by Protein ID:NP_080164Link to BLAST:NP_080164.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343229.1 419 Q8CDD8-1 419 100% 0 0
NP_080164.2 419 Q8CDD8-1 419 100% 0 0

Chromosomal Locations for CCDS 28588.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28957898 28958057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28961414 28961687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28962810 28962912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28963251 28963371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28963961 28964158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28964974 28965084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28966652 28966944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGAATGTTCACCAGGGCAGTGATGGCGACTGGTCATTGCAGCCAGAGCTCAGCTGCCTAGGAGATGAGG
CCTTAGCTGCCACTCAAGAGAAAGAAGGCAGCAGCTTGGTGTCCTCTGGTCTGCATAGTGTCACTTATCC
CCTAGCTGCCAGGAGTGAAGACCTTGCACTTGACTATGCCTCTCAGCCAGCAAGCCTTCCGCATCCTCAC
ATAATGCCACTTCCTGAAGACAACAAGGGCTCATGCTTCCAGAGTGGGAGCAAACGGAGCCACGAGCCCT
TCATTGTGCCAGAGAGATTTGGAAACAGCGGCTTAGGTTTTGGAGGTGGCGCTCACTCTCAAGCCCCAGA
GAAGGTGACACTTCTTGTGGATGGCACTCGTTTTGTGGTAAATCCTCAGATTTTCACTGCTCATCCGGAT
ACCATGTTGGGAAGGATGTTTGGGCCGGGAAGAGAATACAACTTCACAAGGCCCAATGAAAAGGGGGAGT
ATGTGATCGCGGAGGGGATCAGCGCCACCGTGTTCCGCACAGTCCTGGATTATTACAAAACTGGCATCAT
CAACTGTCCAGATGGCATCTCTATCCCAGACCTCAGAGACACGTGTGACTATCTCTGCATTAACTTCGAC
TTCAACACTATCCGATGTCAGGATCTGAGTGCTCTACTGCACGAGCTCTCCAACGATGGTGCCCACAAGC
AGTTTGACCACTACCTCGAGGAACTGATTCTGCCCATCATGGTGGGCTGTGCCAAGAAAGGCGAGCGAGA
GTGTCACATTGTCGTGCTGACAGACGAGGACTCTGTGGACTGGGATGAAGACCACCCCCCACCCATGGGG
GAAGAGTATTCCCAAATTCTTTACAGCTCCAAGCTCTACAGATTCTTCAAATATATCGAGAATAGAGATG
TTGCTAAAACTGTGTTAAAGGAACGAGGCCTGAAGAACATCCGCATTGGAATTGAAGGTTACCCTACCTG
TAAAGAGAAGATCAAGAGGAGACCTGGCGGGCGGTCTGAAGTCATCTACAATTATGTGCAGCGCCCTTTT
ATCCAGATGTCATGGGAAAAAGAGGAAGGAAAGAGTCGCCATGTGGATTTCCAGTGCGTTCGCAGCAAAT
CCCTCACTAATTTGGTGGCTGCTGGAGAGGATGTCTTAGAAGACCAGGAGATAATAATGCATCACCCACC
ACAAGTAGATGAACTTGACCGCTTAAATGCTCCACTCTCTCAGATGGCTCCGAATGACTTTCAAGATTAG

Translation (419 aa):
MNVHQGSDGDWSLQPELSCLGDEALAATQEKEGSSLVSSGLHSVTYPLAARSEDLALDYASQPASLPHPH
IMPLPEDNKGSCFQSGSKRSHEPFIVPERFGNSGLGFGGGAHSQAPEKVTLLVDGTRFVVNPQIFTAHPD
TMLGRMFGPGREYNFTRPNEKGEYVIAEGISATVFRTVLDYYKTGIINCPDGISIPDLRDTCDYLCINFD
FNTIRCQDLSALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEDSVDWDEDHPPPMG
EEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEVIYNYVQRPF
IQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEIIMHHPPQVDELDRLNAPLSQMAPNDFQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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