NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28574.1 Public Mus musculus 17 Def6 23 108 98 CCDS HistoryNCBI Gene:23853Re-query CCDS DB by CCDS ID:28574.1Re-query CCDS DB by GeneID:23853See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002327.5 ENSMUSP00000002327.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002327.5Link to Ensembl Protein Viewer:ENSMUSP00000002327.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000002327Re-query CCDS DB by Protein ID:ENSMUSP00000002327
Original member Current member NCBI NM_027185.3 NP_081461.2 Accepted alive Link to Nucleotide Sequence:NM_027185.3Link to Protein Sequence:NP_081461.2Re-query CCDS DB by Nucleotide ID:NM_027185Re-query CCDS DB by Protein ID:NP_081461Link to BLAST:NP_081461.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081461.2 630 Q8C2K1-1 630 99.8413% 0 1

Chromosomal Locations for CCDS 28574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28207843 28207938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28216965 28217105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28217601 28217786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28219745 28219981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28220077 28220223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28223672 28223780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28223888 28224186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28225845 28226011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28226101 28226299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28227807 28227897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28228069 28228289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1893 nt):
ATGGCCCTGCGCAAGGAGCTGCTCAAGTCTATCTGGTACGCCTTCACTGCACTGGACGTGGAGAAGAGCG
GCAAGGTCTCCAAGTCCCAACTCAAGGTGCTGTCCCACAACCTGTACACTGTCCTGAACATCCCCCATGA
CCCCGTGGCCCTGGAGGAGCACTTCCGGGATGACGATGATGGCCCGGTGTCCAGTCAAGGTTACATGCCC
TACCTCAACAAGTACATCCTAGACAAGGTGGAGGAGGGAGCTTTCGTTAAGGAGCACTTCGATGAGTTGT
GCTGGACCCTGACTGCCAAGAAGAACTACAGGGCAGATGGCATCGGGAGCAGCCCACTCTCTAATCAGGA
TGCTTTCCGTCTATGGTGCCTCTTCAACTTCCTGTCTGAGGACAAGTACCCGCTGATCATGGTTCCCGAT
GAGGTAGAGTATCTGCTGAAGAAGCTCCTTGGCAGCCTGAGTTTGGAGATGGGCCTGGGCAAGCTGGAGG
AGCTGCTGGCCCAGGACGCCCAGTCAGCCCAGACCGCCGTGGGGCTCAGCGTCTGGCAGTTTCTGGAACT
CTTCAACTCAGGCCGCTGCCTTCGGGGTGTGGGGCGCGACTCCCTCAGCATGGCCATCCAAGAAGTCTAC
CAGGAGCTCATCCAAGACGTCCTGAAGCAGGGCTATCTGTGGAAGCGAGGGCACCTGCGGAGGAACTGGG
CCGAGCGCTGGTTCCAGCTGCAACCCAGCAGCCTCTGCTACTTTGGGAGTGAGGAATGCAAGGAGAAACG
AGGCACCATTCCCCTGGATGCTCACTGCTGTGTGGAGGTGCTTCCGGACCGCGAAGGAAAGCGCTGCATG
TTTTGTGTGAAGACTGCCAGCCGCACCTATGAGATGAGCGCCTCAGACACCCGCCAGCGCCAGGAGTGGA
CGGCCGCCATCCAGACTGCGATCCGGCTGCAGGCGGAGGGGAAGACGTCGCTGCACAAGGACCTGAAACA
GAAGCGGCGGGAGCAGCGGGAACAGCGCGAGCGACGCCGGGCAGCCAAGGAGGAGGAGCTGCTGCGACTG
CAGCAGCTGCAGGAGGAGAAGGAGAGGAAGCTGCAAGAACTGGAGCTGCTGCAGGAGGCTCAGCGGCAGG
CCGAGCGGCTGCTGCAGGAAGAGGAGGAGCGCCGCCGTAGCCAGCACAAGGAGCTGCAGCAGGCTCTGGA
GGGCCAGCTGCGGGAGGCGGAGCAGGCCCGGGCCTCTATGCAGGCTGAGATGGAGCTGAAGAAGGAAGAG
GCGGCCCGGCAACGGCAGCGCATCGCTGAACTGGAGGAGATGCAGGAGCGGCTGCAGGAAGCTCTGCAAC
TAGAGGTGAAAGCTAGGCGGGATGAGGAGGCCGTGCGCCTCGCCCAGACCAGGCTGCTGGAGGAGGAGGA
GGAGAAGCTGAAGCAGCTGATGCATCTGAAGGAGGAGCAAGAGCGCTACATCGAGCGAGCGCAGCAGGAG
AAGCAGGAGCTCCAGCAGGAGATGGCGCTGCAGAGCCGTTCCCTGCAGCACGCCCAGCAGCAGCTGGAGG
AAGTGCGGCAGAACCGGCAGAGGGCAGACGAGGACGTGGAGGCTGCCCAGAGGAAGTTGCGCCAGGCCAG
CACCAACGTGAAACACTGGAATGTCCAGATGAACAGGCTCATGCATCCGATCGAGCCAGGAGATAAGCGA
CCCACCACCAGCAGCTCCTTCACGGGCTTCCAGCCCCCTCCGCTTGCCCGCCGGGACTCCTCTCTAAAGC
GCCTGACCCGCTGGGGTTCCCAAGGTAACAGAACCCTCTCAGTCAATAGCAGCGAACAGAAGTCCCTCAA
TGGTGGAGATGAGACTCCCATCCTAGCTTTGGCCTCTCAGGAAGAAAAACTGGATCCAGCACCAGGGAAT
TAG

Translation (630 aa):
MALRKELLKSIWYAFTALDVEKSGKVSKSQLKVLSHNLYTVLNIPHDPVALEEHFRDDDDGPVSSQGYMP
YLNKYILDKVEEGAFVKEHFDELCWTLTAKKNYRADGIGSSPLSNQDAFRLWCLFNFLSEDKYPLIMVPD
EVEYLLKKLLGSLSLEMGLGKLEELLAQDAQSAQTAVGLSVWQFLELFNSGRCLRGVGRDSLSMAIQEVY
QELIQDVLKQGYLWKRGHLRRNWAERWFQLQPSSLCYFGSEECKEKRGTIPLDAHCCVEVLPDREGKRCM
FCVKTASRTYEMSASDTRQRQEWTAAIQTAIRLQAEGKTSLHKDLKQKRREQREQRERRRAAKEEELLRL
QQLQEEKERKLQELELLQEAQRQAERLLQEEEERRRSQHKELQQALEGQLREAEQARASMQAEMELKKEE
AARQRQRIAELEEMQERLQEALQLEVKARRDEEAVRLAQTRLLEEEEEKLKQLMHLKEEQERYIERAQQE
KQELQQEMALQSRSLQHAQQQLEEVRQNRQRADEDVEAAQRKLRQASTNVKHWNVQMNRLMHPIEPGDKR
PTTSSSFTGFQPPPLARRDSSLKRLTRWGSQGNRTLSVNSSEQKSLNGGDETPILALASQEEKLDPAPGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH