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Report for CCDS28511.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28511.1 Public Mus musculus 17 Gnptg 23 108 98 CCDS HistoryNCBI Gene:214505Re-query CCDS DB by CCDS ID:28511.1Re-query CCDS DB by GeneID:214505See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28511.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038973.6 ENSMUSP00000042073.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038973.6Link to Ensembl Protein Viewer:ENSMUSP00000042073.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000038973Re-query CCDS DB by Protein ID:ENSMUSP00000042073
Original member Current member NCBI NM_172529.3 NP_766117.2 Accepted alive Link to Nucleotide Sequence:NM_172529.3Link to Protein Sequence:NP_766117.2Re-query CCDS DB by Nucleotide ID:NM_172529Re-query CCDS DB by Protein ID:NP_766117Link to BLAST:NP_766117.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766117.2 307 Q6S5C2-1 307 99.6743% 0 1

Chromosomal Locations for CCDS 28511.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25234622 25234722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25234808 25234889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25234980 25235111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25235182 25235264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25235345 25235459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25235534 25235627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25235705 25235788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25235856 25235910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25239775 25239842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25239914 25239971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25240060 25240111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGCGGGGCGGCTGGCTGGCTTCCTGATGTTGCTGGGGCTCGCGTCGCAGGGGCCCGCGCCGGCATGTG
CCGGGAAGATGAAGGTGGTGGAGGAGCCTAACACATTCGGGCTGAATAACCCGTTCTTGCCCCAGGCAAG
CCGCCTTCAGCCCAAGAGAGAGCCTTCAGCTGTATCCGGGCCCCTGCATCTCTTCAGACTTGCTGGCAAG
TGCTTTAGCCTAGTGGAGTCCACGTACAAGTATGAATTCTGCCCTTTCCACAACGTCACCCAGCACGAGC
AGACCTTCCGCTGGAACGCCTACAGCGGGATCCTTGGCATCTGGCATGAGTGGGAAATCATCAACAATAC
CTTCAAGGGCATGTGGATGACTGATGGGGACTCCTGCCACTCCCGGAGCCGGCAGAGCAAGGTGGAGCTC
ACCTGTGGAAAGATCAACCGACTGGCCCACGTGTCTGAGCCAAGCACCTGTGTCTATGCATTGACATTCG
AGACCCCTCTTGTTTGCCATCCCCACTCTTTGTTAGTGTATCCAACTCTGTCAGAGGCCCTGCAGCAGCG
CTGGGACCAGGTGGAACAGGACCTGGCAGACGAACTGATCACACCACAGGGCTATGAGAAGTTGCTAAGG
GTACTTTTTGAGGATGCTGGCTACTTAAAGGTCCCAGGAGAAACCCATCCCACCCAGCTGGCAGGAGGTT
CCAAGGGCCTGGGGCTTGAGACTCTGGACAACTGTAGAAAGGCACATGCAGAGCTGTCACAGGAGGTACA
AAGACTGACGAGTCTGCTGCAACAGCATGGAATCCCCCACACTCAGCCCACAGAAACCACTCACTCTCAG
CACCTGGGTCAGCAGCTCCCCATAGGTGCAATCGCAGCAGAGCATCTGCGGAGTGACCCAGGACTACGTG
GGAACATCCTGTGA

Translation (307 aa):
MAGRLAGFLMLLGLASQGPAPACAGKMKVVEEPNTFGLNNPFLPQASRLQPKREPSAVSGPLHLFRLAGK
CFSLVESTYKYEFCPFHNVTQHEQTFRWNAYSGILGIWHEWEIINNTFKGMWMTDGDSCHSRSRQSKVEL
TCGKINRLAHVSEPSTCVYALTFETPLVCHPHSLLVYPTLSEALQQRWDQVEQDLADELITPQGYEKLLR
VLFEDAGYLKVPGETHPTQLAGGSKGLGLETLDNCRKAHAELSQEVQRLTSLLQQHGIPHTQPTETTHSQ
HLGQQLPIGAIAAEHLRSDPGLRGNIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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