NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28470.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28470.1 Public Mus musculus 17 Prss30 23 108 98 CCDS HistoryNCBI Gene:30943Re-query CCDS DB by CCDS ID:28470.1Re-query CCDS DB by GeneID:30943See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28470.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024936.10 ENSMUSP00000024936.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024936.10Link to Ensembl Protein Viewer:ENSMUSP00000024936.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000024936Re-query CCDS DB by Protein ID:ENSMUSP00000024936
Original member Current member EBI ENSMUST00000234765.1 ENSMUSP00000157077.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000234765.1Link to Ensembl Protein Viewer:ENSMUSP00000157077.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000234765Re-query CCDS DB by Protein ID:ENSMUSP00000157077
Original member Current member NCBI NM_013921.3 NP_038949.2 Accepted alive Link to Nucleotide Sequence:NM_013921.3Link to Protein Sequence:NP_038949.2Re-query CCDS DB by Nucleotide ID:NM_013921Re-query CCDS DB by Protein ID:NP_038949Link to BLAST:NP_038949.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038949.2 310 Q9QYZ9 310 100% 0 0

Chromosomal Locations for CCDS 28470.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 23972613 23972867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23973038 23973198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23973577 23973848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23973941 23974106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23974220 23974246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 23975129 23975180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGAGTCCCGGGCAAGGTGCATCTTTCTTCTTTTGCTGCAGATCCTGACAAGGGCACGTGGAGATATAT
TGCCCTCAGTATGTGGCCACTCCCGAGATGCTGGAAAGATCGTGGGTGGTCAAGATGCTTTGGAAGGACA
ATGGCCTTGGCAAGTCAGCCTGTGGATAACCGAGGATGGCCACATATGCGGGGGCTCCCTCATCCACGAG
GTGTGGGTGCTCACGGCTGCCCACTGCTTCCGCAGGTCTCTGAACCCTAGCTTCTACCATGTGAAGGTTG
GAGGGCTGACACTTTCCCTTCTGGAACCCCACTCAACTTTAGTGGCCGTGAGGAACATCTTCGTGCATCC
CACCTACCTCTGGGCAGATGCGTCTAGCGGAGACATTGCCCTGGTGCAGCTGGATACTCCTCTGCGGCCC
TCTCAGTTCACTCCTGTCTGCCTCCCAGCAGCCCAGACTCCTCTCACCCCTGGGACTGTCTGCTGGGTGA
CAGGCTGGGGAGCCACCCAGGAAAGAGACATGGCAAGTGTCCTCCAGGAGTTAGCTGTGCCTCTCTTGGA
CTCAGAGGACTGTGAAAAGATGTACCACACCCAGGGGAGCAGCCTGTCAGGGGAGCGAATCATCCAGTCG
GACATGCTCTGTGCAGGCTACGTAGAAGGCCAGAAGGACTCCTGCCAGGGTGACTCTGGAGGACCGCTCG
TTTGTTCCATCAACAGTTCTTGGACCCAGGTCGGGATCACCAGCTGGGGTATTGGCTGCGCTCGGCCATA
CAGGCCTGGTGTCTACACTCGGGTGCCCACCTATGTGGACTGGATTCAAAGGATCCTGGCAGAGAACCAC
TCTGATGCCTATGGGTACCACTCCAGTGCCTCTGCAGCATACCAAATGCTGCTGCCAGTGTTGCTGGCCG
TTGCCTTGCCAGGGTCCCTATGA

Translation (310 aa):
MESRARCIFLLLLQILTRARGDILPSVCGHSRDAGKIVGGQDALEGQWPWQVSLWITEDGHICGGSLIHE
VWVLTAAHCFRRSLNPSFYHVKVGGLTLSLLEPHSTLVAVRNIFVHPTYLWADASSGDIALVQLDTPLRP
SQFTPVCLPAAQTPLTPGTVCWVTGWGATQERDMASVLQELAVPLLDSEDCEKMYHTQGSSLSGERIIQS
DMLCAGYVEGQKDSCQGDSGGPLVCSINSSWTQVGITSWGIGCARPYRPGVYTRVPTYVDWIQRILAENH
SDAYGYHSSASAAYQMLLPVLLAVALPGSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH