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Report for CCDS28316.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28316.1 Public Mus musculus 16 Mis18a 23 108 98 CCDS HistoryNCBI Gene:66578Re-query CCDS DB by CCDS ID:28316.1Re-query CCDS DB by GeneID:66578See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28316.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099554.4 ENSMUSP00000097150.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099554.4Link to Ensembl Protein Viewer:ENSMUSP00000097150.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000099554Re-query CCDS DB by Protein ID:ENSMUSP00000097150
Original member Current member NCBI NM_025642.1 NP_079918.1 Accepted alive Link to Nucleotide Sequence:NM_025642.1Link to Protein Sequence:NP_079918.1Re-query CCDS DB by Nucleotide ID:NM_025642Re-query CCDS DB by Protein ID:NP_079918Link to BLAST:NP_079918.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079918.1 204 Q9CZJ6 204 100% 0 0

Chromosomal Locations for CCDS 28316.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 90719898 90719978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90720654 90720750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90721636 90721758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90726293 90726359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90727026 90727272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGTCGAGCGAGTCCCCCCTGCTGGAGAAGCGTCTGTCGGAAGACTCGAGCCGCTACCTGCGGCTGCAGA
AGTGGGCAAACATGTCGAGCGCAGACGCGTTAGGGCTAGAGAAGGAACGGCCTGAGGAGAAGGCGGCCGC
GGCGGAGAACCCGCTGGTGTTCCTTTGTGCCCGCTGTCGCCGGCCACTGGGCGACTCGCTCACCTGGGTG
GCCAGCCAGGAGGACACCAACTGCATCCTGTTGCGCAGCGTCTCCTGTAACGTCTCTGTGGATAAGGAAC
CGAAACTGTCCAAGTGCAGAGATGAAGACGGTTGCATCCTTGAGGCGCTGTACTGCACGGGCTGCTCCCT
CAGCCTTGGCTATGTGTACAGATGCACTCCTAAGAACCTGGACTACAAGCGCGACTTGTTCTGCCTCAGC
GTTGAAGCCGTTGAAAGTTACACCTTAGGGTCCTCTGAGAAGCAAATCGTGTCAGAAGACAAGGAGCTTT
TCAACCTTGAAAGCCGAGTTGAAATAGAGAAGTCTATAAAGCAGATGGAAGAAGTCCTGACAGCCCTGCA
AAAGAAGCTACGGGAAGTTGAATCTAAACTGTCCTTGGCCAGCCGGGGCAGCTGA

Translation (204 aa):
MSSESPLLEKRLSEDSSRYLRLQKWANMSSADALGLEKERPEEKAAAAENPLVFLCARCRRPLGDSLTWV
ASQEDTNCILLRSVSCNVSVDKEPKLSKCRDEDGCILEALYCTGCSLSLGYVYRCTPKNLDYKRDLFCLS
VEAVESYTLGSSEKQIVSEDKELFNLESRVEIEKSIKQMEEVLTALQKKLREVESKLSLASRGS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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