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Report for CCDS28265.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28265.1 Public Mus musculus 16 4930453N24Rik 23 108 98 CCDS HistoryNCBI Gene:67609Re-query CCDS DB by CCDS ID:28265.1Re-query CCDS DB by GeneID:67609See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28265.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076991.6 ENSMUSP00000076255.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076991.6Link to Ensembl Protein Viewer:ENSMUSP00000076255.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000076991Re-query CCDS DB by Protein ID:ENSMUSP00000076255
Original member Current member NCBI NM_026273.2 NP_080549.1 Accepted alive Link to Nucleotide Sequence:NM_026273.2Link to Protein Sequence:NP_080549.1Re-query CCDS DB by Nucleotide ID:NM_026273Re-query CCDS DB by Protein ID:NP_080549Link to BLAST:NP_080549.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080549.1 348 Q3TTL0 348 100% 0 0

Chromosomal Locations for CCDS 28265.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 64766313 64766993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64768924 64769162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 64770737 64770863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGTCGGGGCTCAGCCACTTAGAGTCGGAGGGCTGCCGAAACCTACTCGGCCTGCTGGACAACGACGAGA
TCATGGCCCTTTGCGACACCGTCACCAACCGCCTGGTGCAGCCTGTGGACCGCCAAGATGCTATTCATGC
AATATTAGTGTATAGCCAAAATGTAGAAGAACTTCTGAGGCGCAAGAAAGTCCACCGAGAAGTCATATTT
AAGTATTTGGCAAAGCAAGGGGTGGTTGTACCTCCAACTGCTGAAAAACACAATCTTATTCAGTATGCAA
AAGATTACTGGGCAAAACAGTCACCAAAACTGAAGGACACAGCAGAGCCAGTTACAAAGACGGAGGACAT
CCAGCTCTTTAAGCAGCAGGCAAAGGAAGATAAAGAAGCTGAAAAGGTTGATTTTCGTCGCTTAGGAGAA
GAATTCTGTCACTGGTTCTTTGAACTTCTTAATTCTCAGAATCCTTTTTTGGGCCCACCTCAAGATGACT
GGGGCCCACAGCACTTCTGGCACGACGCCAAGCTTAGGTTTTATTATAACACCTCAGAACAAAACACGAC
AGACTACCAAGGAGCCGAAATCGTGAGCCTTCGCTTACTGTCATTAGTTAAAGAGGAATTTCTCTTTCTC
AGTCCCAACCTTGATTCTCAAGGACTAAAATGTGCGTCTTCTCCTCATGGATTAGTTATGGTTGGAGTTG
CAGGGACTGTCCACCGAGGAAATTCTTGTTTGGGCATATTTGAGCAAATTTTTGGACTTATCCGTAGCCC
TTTTGTGGAAAATACTTGGAAAATCAAATTTATCAACCTGAGAATCATTGGAGGAAGTTCCCTTGCTCCT
GAATCAGTACTGAAGCCATCTGTAACATTTGAACCAAGTGATCTGGAGGCCTTTTATAACGTAATCACCT
TGTGTAATAGCCCTGAAGTAAGACCTAACGTAAGGCAGATAATAGATAGTGGCACTGGAGACCAGGTTTT
ACATAGTGGAGATGAGGCATTGTTGAACAAAAGGGAAATGAATTTGCTAACCCCTCTAAAGCATTGA

Translation (348 aa):
MSGLSHLESEGCRNLLGLLDNDEIMALCDTVTNRLVQPVDRQDAIHAILVYSQNVEELLRRKKVHREVIF
KYLAKQGVVVPPTAEKHNLIQYAKDYWAKQSPKLKDTAEPVTKTEDIQLFKQQAKEDKEAEKVDFRRLGE
EFCHWFFELLNSQNPFLGPPQDDWGPQHFWHDAKLRFYYNTSEQNTTDYQGAEIVSLRLLSLVKEEFLFL
SPNLDSQGLKCASSPHGLVMVGVAGTVHRGNSCLGIFEQIFGLIRSPFVENTWKIKFINLRIIGGSSLAP
ESVLKPSVTFEPSDLEAFYNVITLCNSPEVRPNVRQIIDSGTGDQVLHSGDEALLNKREMNLLTPLKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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