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Report for CCDS28196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28196.1 Public Mus musculus 16 Btla 23 108 98 CCDS HistoryNCBI Gene:208154Re-query CCDS DB by CCDS ID:28196.1Re-query CCDS DB by GeneID:208154See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28196.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102802.9 ENSMUSP00000099866.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102802.9Link to Ensembl Protein Viewer:ENSMUSP00000099866.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102802Re-query CCDS DB by Protein ID:ENSMUSP00000099866
Original member Current member NCBI NM_177584.3 NP_808252.1 Accepted alive Link to Nucleotide Sequence:NM_177584.3Link to Protein Sequence:NP_808252.1Re-query CCDS DB by Nucleotide ID:NM_177584Re-query CCDS DB by Protein ID:NP_808252Link to BLAST:NP_808252.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808252.1 305 Q7TSA3-3 305 99.6721% 0 1

Chromosomal Locations for CCDS 28196.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 45224353 45224461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45239044 45239364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45242706 45242741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45244156 45244311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45246251 45246297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45250349 45250597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGAAGACAGTGCCTGCCATGCTTGGGACTCCTCGGTTATTTAGGGAATTCTTCATCCTCCATCTGGGCC
TCTGGAGCATCCTTTGTGAGAAAGCTACTAAGAGGAATGATGAAGAGTGTCCAGTGCAACTTACTATTAC
GAGGAATTCCAAACAGTCTGCCAGGACAGGAGAGTTATTTAAAATTCAATGTCCTGTGAAATACTGTGTT
CATAGACCTAATGTGACTTGGTGTAAGCACAATGGAACAATCTGTGTACCCCTTGAGGTTAGCCCTCAGC
TATACACTAGTTGGGAAGAAAATCAATCAGTTCCGGTTTTTGTTCTCCACTTTAAACCAATACATCTCAG
TGATAATGGGTCGTATAGCTGTTCTACAAACTTCAATTCTCAAGTTATTAATAGCCATTCAGTAACCATC
CATGTGACAGAAAGGACTCAAAACTCTTCAGAACACCCACTAATAATATCTGACATCCCAGATGCCACCA
ATGCCTCAGGACCATCCACCATGGAAGAGAGGCCAGGCAGGACTTGGCTGCTTTACACCTTGCTTCCTTT
GGGGGCATTGCTTCTGCTCCTTGCCTGTGTCTGCCTGCTCTGCTTTCTGAAAAGGATCCAAGGGAAAGAA
AAGAAGCCTTCTGACTTGGCAGGAAGGGACACTAACCTGGTTGATATTCCAGCCAGTTCCAGGACAAATC
ACCAAGCACTGCCATCAGGAACTGGAATTTATGATAATGATCCCTGGTCTAGCATGCAGGATGAATCTGA
ATTGACAATTAGCTTGCAATCAGAGAGAAACAACCAGGGCATTGTTTATGCTTCTTTGAACCATTGTGTT
ATTGGAAGGAATCCAAGACAGGAAAACAACATGCAGGAGGCACCCACAGAATATGCATCCATTTGTGTGA
GAAGTTAA

Translation (305 aa):
MKTVPAMLGTPRLFREFFILHLGLWSILCEKATKRNDEECPVQLTITRNSKQSARTGELFKIQCPVKYCV
HRPNVTWCKHNGTICVPLEVSPQLYTSWEENQSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTI
HVTERTQNSSEHPLIISDIPDATNASGPSTMEERPGRTWLLYTLLPLGALLLLLACVCLLCFLKRIQGKE
KKPSDLAGRDTNLVDIPASSRTNHQALPSGTGIYDNDPWSSMQDESELTISLQSERNNQGIVYASLNHCV
IGRNPRQENNMQEAPTEYASICVRS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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