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Report for CCDS28192.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28192.1 Public Mus musculus 16 Ccdc80 23 108 98 CCDS HistoryNCBI Gene:67896Re-query CCDS DB by CCDS ID:28192.1Re-query CCDS DB by GeneID:67896See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28192.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061050.5 ENSMUSP00000058752.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061050.5Link to Ensembl Protein Viewer:ENSMUSP00000058752.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000061050Re-query CCDS DB by Protein ID:ENSMUSP00000058752
Original member Current member EBI ENSMUST00000099498.9 ENSMUSP00000097097.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099498.9Link to Ensembl Protein Viewer:ENSMUSP00000097097.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099498Re-query CCDS DB by Protein ID:ENSMUSP00000097097
Original member Current member NCBI NM_026439.3 NP_080715.2 Accepted alive Link to Nucleotide Sequence:NM_026439.3Link to Protein Sequence:NP_080715.2Re-query CCDS DB by Nucleotide ID:NM_026439Re-query CCDS DB by Protein ID:NP_080715Link to BLAST:NP_080715.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080715.2 949 Q8R2G6 949 100% 0 0

Chromosomal Locations for CCDS 28192.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 45094883 45096757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45104380 45104536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45116246 45116382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45118101 45118249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45122847 45122950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45126122 45126202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 45127164 45127510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2850 nt):
ATGATGTGGAAAATGGGACCCCACTTCACCACGCTCTTGGCCATGTGGCTGGTGTGTGGCTCAGCATCTC
ATTCTCCTGCCTTGGATAGCGACAGCCACACTGGACGGAAAGTACCTTTGGTTTCTCCAATCAGCAGTAG
GTCAGCTCGGTATCTGAGGCACACCGGGAGGTCTGGTGGAGTTGAGAAATCCACCCAGGAAGAACCAAAT
CCTCAGCCTTTCCAAAGGAGGAAGAGTGTACCAGTGTTGAGATTAGCTCACCCGACCATGAGACCACCCC
CCTCAGGTATCAATGGAGTTCCAGTCAGACCTGAGGTGAGACCCATAGCTAGGAGCTCGGCGCGTGAGAT
GGTCCGAGATGAGGGGTCTTCTGCTCGGACAAGAATGTTGCGATTCCCCTCTGGATCTAGCTCTCCCAAT
ATCCTGGCCAGCTTTGCAGGAAAGAACAGGGTATGGGTCATCTCAGCCCCTCACGCCTCAGAGGGCTACT
ACCGCCTCATGATGAGCCTCCTGAAGGACGACGTGTATTGTGAGCTGGCAGAAAGGCACATCCAACAGAT
TGTGCTCTTCCACCAGGCAGGCGAGGAAGGGGGCAAGGTACGGAGGATCACCAATGAAGGGCAGATCCTG
GAGCAGCCTCTGGACCCCAATCTCATCCCAAAGCTGATGAGCTTCTTGAAACTGGAGAAGGGCAAGTTTA
GCATGGTGCTGTTAAAAAAGACTCTGCAGGTGGAGGAGCGCTACCCTTACCCGGTCAGGCTGGAAGCCAT
GTATGAGGTCATTGATCAAGGTCCCATCCGCAGGATCGAGAAAATCAGGCAGAAGGGTTTTGTCCAAAAG
TGTAAGGCCTCGGGCATAGAGGGCCATGTAGTCCAGGAAGGAAACGAGGGCGGTGGAGGAGCAGGAGGTA
CAGGCCTGGGCGGTGATAAGAGGAAAGAGGACCCAAGGAGAACACAAGTCCACCCCACCAGAGAGGCTCC
GAGAAAGCAGGCCACCAGCAAGGCAGCCACTCCTCAGCCTCCCCCAACTCCAAGGGCCACCACCCTTCCT
CCTGCTCCAGTCACGACAGCCACTCGGGCCACATCCCGGGTAGTGACAATAGCCGCAAGACCTACAACCA
CCACTGCCTATCCAGCTACCCAGAGGCCCTGGACATCCCGGTTGCATCCCTTCTCAGTCTCCCACAGGCC
CCCTGCAACAGCAGAGGTGACCACTGCCAGGGGCCCCTCCGTCTCAGAGCAGCTATACCCTCTACCTCGG
AAGGAGCAACAGAGAGAGAAGCCACAGGCCACCAGGAGGCCCAGCAAAGCCACCAACTATGGAAGCTTCA
CAGCCACCCCACCTCCCACCCTCTGGGAGGTCAGCGCAAGAGTTGTGGGCACAAGCCGTTTCCGGGACAA
CCGGACAGACAAACGGGAACATGGCCATCAGGACCCAAATGCGGTGCCAGGTCCTCACAAGCCAGTAAAG
GGGAAGCTGCCCAAAAAGAAGGACAGAATTCTCAGCAACGAATATGAAGACAAGTATGACCTCAGCCAGC
CCACCTCCTCTCAGGGGGAGGAGGAGCGGCAGGTGGATAGCGTTCCCTCGCAGAATGCCAAGGAGTCGAA
AAAGCTTGAAAAGCTCGAGAAACCTGAGAAGGAGAAGAAGAAAAAAGGGAAGAGTGCAAAACAAGACAAG
TTACTCAAGAGTGAAAAGCAAGCGAAGAAAGCTGAGAAAAAGACCAAACAGGAGAAAGACAAGAATAAGA
AGAAAAAGGCGGGTAAGACAGAGCAGGATGACAATCAGAAGCCCACCGCAAAACATCTCGCTCCAAGTCC
CAAGAAGTCAGTGGCCGACCTGTTGGGGTCTTTCGAAGGCAAACGAAGACTCCTCCTGATCACCACTCCC
AAGGCTGAGAACAATATGTATGTGCAGCAGCGGGATGAATATCTGGAGAGCTTCTGCAAGATGGCCACCA
GGAGGATCTCTGTGGTCACCATCTTTGGTCCTGTCAACAACAGCTCCATGAAAATTGATCACTTCCAGCT
AGATAATGAGAAACCCATGCGTGTGGTGGATGATGATGACTTGGTGGACCAACATCTCATCAGCGAGCTG
AGGAAGGAGTATGGAATGACCTACGATGACTTCTTCATGGTGCTGACAGACGTGGATCTGAGAGTCAAGC
AATACTACGAAGTGCCAATAGCAATGAAGTCCGTGTTTGATCTTATTGACACTTTCCAATCCCGAATCAA
AGATATGGAGAAGCAGAAGAAGGAGGGCATTGCCTGCAAGGAGGACAAGAGGCAGTCCCTGGAGAACTTC
CTATCCAGGTTCCGATGGAGGAGGAGGTTGCTGGTGATCTCTGCTCCTAATGATGAAGACTGGGCCTATT
CACAACAGCTCTCTGCCCTCAACGGTCAGGCATGCAATTTTGGTCTGCGACATATAACCATTCTGAAGCT
TTTGGGTGTTGGAGAGGAAGTTGGAGGAGTTTTAGAACTGTTCCCAATTAATGGGAGCTCCATCGTTGAG
CGGGAAGATGTGCCAGCCCACTTGGTCAAAGATATCCGCAACTATTTTCAAGTGAGCCCAGAGTACTTCT
CCATGCTTCTAGTTGGAAAAGATGGCAATGTTAAATCTTGGTATCCTTCTCCTATGTGGTCGATGGTCAT
CGTGTATGACTTAATTGATTCCATGCAACTTCGGAGACAGGAAATGGCCATTCAGCAGTCTCTGGGGATG
CGCTGCCCAGAAGATGAGTATGCAGGATATGGTTACCATAGTTATCACCAAGGATACCAGGATGGCTACC
AGGATGACTACCGTCATCATGAAAGTTACCACCATGGATACCCTTACTGA

Translation (949 aa):
MMWKMGPHFTTLLAMWLVCGSASHSPALDSDSHTGRKVPLVSPISSRSARYLRHTGRSGGVEKSTQEEPN
PQPFQRRKSVPVLRLAHPTMRPPPSGINGVPVRPEVRPIARSSAREMVRDEGSSARTRMLRFPSGSSSPN
ILASFAGKNRVWVISAPHASEGYYRLMMSLLKDDVYCELAERHIQQIVLFHQAGEEGGKVRRITNEGQIL
EQPLDPNLIPKLMSFLKLEKGKFSMVLLKKTLQVEERYPYPVRLEAMYEVIDQGPIRRIEKIRQKGFVQK
CKASGIEGHVVQEGNEGGGGAGGTGLGGDKRKEDPRRTQVHPTREAPRKQATSKAATPQPPPTPRATTLP
PAPVTTATRATSRVVTIAARPTTTTAYPATQRPWTSRLHPFSVSHRPPATAEVTTARGPSVSEQLYPLPR
KEQQREKPQATRRPSKATNYGSFTATPPPTLWEVSARVVGTSRFRDNRTDKREHGHQDPNAVPGPHKPVK
GKLPKKKDRILSNEYEDKYDLSQPTSSQGEEERQVDSVPSQNAKESKKLEKLEKPEKEKKKKGKSAKQDK
LLKSEKQAKKAEKKTKQEKDKNKKKKAGKTEQDDNQKPTAKHLAPSPKKSVADLLGSFEGKRRLLLITTP
KAENNMYVQQRDEYLESFCKMATRRISVVTIFGPVNNSSMKIDHFQLDNEKPMRVVDDDDLVDQHLISEL
RKEYGMTYDDFFMVLTDVDLRVKQYYEVPIAMKSVFDLIDTFQSRIKDMEKQKKEGIACKEDKRQSLENF
LSRFRWRRRLLVISAPNDEDWAYSQQLSALNGQACNFGLRHITILKLLGVGEEVGGVLELFPINGSSIVE
REDVPAHLVKDIRNYFQVSPEYFSMLLVGKDGNVKSWYPSPMWSMVIVYDLIDSMQLRRQEMAIQQSLGM
RCPEDEYAGYGYHSYHQGYQDGYQDDYRHHESYHHGYPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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