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Report for CCDS28114.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28114.1 Public Mus musculus 16 Cep19 23 108 98 CCDS HistoryNCBI Gene:66994Re-query CCDS DB by CCDS ID:28114.1Re-query CCDS DB by GeneID:66994See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28114.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042869.6 ENSMUSP00000046587.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042869.6Link to Ensembl Protein Viewer:ENSMUSP00000046587.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042869Re-query CCDS DB by Protein ID:ENSMUSP00000046587
Original member Current member EBI ENSMUST00000115168.8 ENSMUSP00000110822.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115168.8Link to Ensembl Protein Viewer:ENSMUSP00000110822.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115168Re-query CCDS DB by Protein ID:ENSMUSP00000110822
Original member Current member EBI ENSMUST00000169186.2 ENSMUSP00000126083.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169186.2Link to Ensembl Protein Viewer:ENSMUSP00000126083.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000169186Re-query CCDS DB by Protein ID:ENSMUSP00000126083
Original member NCBI NM_025892.3 NP_080168.1 Updated not alive Link to Nucleotide Sequence:NM_025892.3Link to Protein Sequence:NP_080168.1Re-query CCDS DB by Nucleotide ID:NM_025892Re-query CCDS DB by Protein ID:NP_080168
Current member NCBI NM_025892.4 NP_080168.1 Accepted alive Link to Nucleotide Sequence:NM_025892.4Link to Protein Sequence:NP_080168.1Re-query CCDS DB by Nucleotide ID:NM_025892Re-query CCDS DB by Protein ID:NP_080168Link to BLAST:NP_080168.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080168.1 163 Q9CQA8 163 100% 0 0

Chromosomal Locations for CCDS 28114.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 32103918 32104047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 32106906 32107267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (492 nt):
ATGAAATACATTGCCAAGAAATGTGGAGTTAGGTTCCAGCCTCCAGCTGTGATCTTGATTTATGAGAATG
AAACCGAAGGAAAGAGCCGCCAGCGTATCATGCCTGTCCGAAACTTTTCAAAGTTCTCAGATTGCACCAG
AGCTGCGGAACAGTTAAAGAATAACCCACGGCACAAGAGTTACCTGGAACAGGTGCCCCTGAAGCAGCTG
GAGAAGCTGTTTGTTTTTTTGCGAGGTTCCTTGCAGGGGCAGAGCTTGGCAGAAACAATGGAACAGATTC
GGCGGGAAACGACCATCGATCCCGAGGAAGACCTGAACAAACTGGACGACAAGGAGCTCGCCAAAAGGAA
GAGCATCATGGATGAGCTTTTCGAGAAAAATCAGAAGAGAAAGGACGACCCCACTTTTGTGTACGACGTC
GAGGTGGAGTTCCCTCAGGATGAACAGCTGCTGTCCTGCAGCTGGGACACAGCGTCAGTGGATGACTTCT
GA

Translation (163 aa):
MKYIAKKCGVRFQPPAVILIYENETEGKSRQRIMPVRNFSKFSDCTRAAEQLKNNPRHKSYLEQVPLKQL
EKLFVFLRGSLQGQSLAETMEQIRRETTIDPEEDLNKLDDKELAKRKSIMDELFEKNQKRKDDPTFVYDV
EVEFPQDEQLLSCSWDTASVDDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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