NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS28071.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28071.1 Public Mus musculus 16 Ahsg 23 108 98 CCDS HistoryNCBI Gene:11625Re-query CCDS DB by CCDS ID:28071.1Re-query CCDS DB by GeneID:11625See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28071.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023583.6 ENSMUSP00000023583.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023583.6Link to Ensembl Protein Viewer:ENSMUSP00000023583.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023583Re-query CCDS DB by Protein ID:ENSMUSP00000023583
Original member NCBI NM_013465.2 NP_038493.1 Updated not alive Link to Nucleotide Sequence:NM_013465.2Link to Protein Sequence:NP_038493.1Re-query CCDS DB by Nucleotide ID:NM_013465Re-query CCDS DB by Protein ID:NP_038493
Current member NCBI NM_013465.3 NP_038493.1 Accepted alive Link to Nucleotide Sequence:NM_013465.3Link to Protein Sequence:NP_038493.1Re-query CCDS DB by Nucleotide ID:NM_013465Re-query CCDS DB by Protein ID:NP_038493Link to BLAST:NP_038493.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038493.1 345 P29699 345 100% 0 0

Chromosomal Locations for CCDS 28071.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 22892115 22892327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22894325 22894435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22894795 22894879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22895194 22895357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22896508 22896609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22898128 22898211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 22898797 22899075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGAAGTCCCTGGTCTTGCTCCTTTGTTTTGCTCAGCTCTGGGGCTGCCAATCCGCTCCACAAGGTACAG
GACTGGGTTTTAGAGAATTGGCTTGTGATGATCCAGAAGCAGAGCAAGTAGCTTTGTTGGCCGTGGACTA
CCTCAATAATCATCTTCTTCAGGGATTCAAACAGGTCTTGAATCAGATCGACAAAGTCAAGGTGTGGTCT
CGGCGGCCCTTCGGAGTGGTGTATGAGATGGAAGTTGACACACTGGAGACCACTTGCCATGCTTTGGACC
CCACCCCGCTGGCAAACTGTTCTGTGAGGCAGCTGACTGAGCACGCGGTGGAGGGAGACTGTGACTTCCA
CATCCTGAAACAAGACGGCCAGTTCAGGGTGATGCACACCCAGTGTCATTCCACCCCAGACTCTGCAGAG
GACGTTCGTAAGTTGTGCCCACGGTGCCCACTCCTGACTCCGTTCAACGATACCAACGTGGTCCACACCG
TCAACACTGCCCTGGCTGCCTTCAACACACAGAATAATGGAACCTATTTTAAACTGGTGGAGATTTCCCG
GGCTCAAAATGTGCCTCTCCCAGTGTCTACTCTGGTGGAGTTTGTAATAGCTGCCACTGACTGTACTGCA
AAAGAAGTCACAGATCCAGCCAAATGCAACCTGCTGGCAGAGAAGCAACATGGCTTCTGCAAGGCAAATC
TCATGCATAATCTTGGTGGGGAAGAAGTTTCAGTGGCCTGCAAGTTATTCCAAACACAGCCCCAGCCAGC
CAATGCCAACGCAGTAGGTCCCGTACCCACAGCGAATGCAGCCCTACCAGCTGACCCACCTGCATCTGTG
GTGGTGGGACCTGTGGTGGTTCCACGAGGACTTTCAGACCACCGAACTTACCACGACCTACGCCACGCCT
TCTCTCCTGTGGCCTCGGTGGAGTCGGCCTCGGGAGAAACTCTTCATTCTCCTAAGGTGGGCCAGCCTGG
TGCTGCTGGTCCAGTGTCCCCCATGTGCCCAGGGAGGATCAGACACTTCAAAATCTAG

Translation (345 aa):
MKSLVLLLCFAQLWGCQSAPQGTGLGFRELACDDPEAEQVALLAVDYLNNHLLQGFKQVLNQIDKVKVWS
RRPFGVVYEMEVDTLETTCHALDPTPLANCSVRQLTEHAVEGDCDFHILKQDGQFRVMHTQCHSTPDSAE
DVRKLCPRCPLLTPFNDTNVVHTVNTALAAFNTQNNGTYFKLVEISRAQNVPLPVSTLVEFVIAATDCTA
KEVTDPAKCNLLAEKQHGFCKANLMHNLGGEEVSVACKLFQTQPQPANANAVGPVPTANAALPADPPASV
VVGPVVVPRGLSDHRTYHDLRHAFSPVASVESASGETLHSPKVGQPGAAGPVSPMCPGRIRHFKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH