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Report for CCDS27894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27894.1 Public Mus musculus 15 Hoxc8 23 108 98 CCDS HistoryNCBI Gene:15426Re-query CCDS DB by CCDS ID:27894.1Re-query CCDS DB by GeneID:15426See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001703.7 ENSMUSP00000001703.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001703.7Link to Ensembl Protein Viewer:ENSMUSP00000001703.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000001703Re-query CCDS DB by Protein ID:ENSMUSP00000001703
Original member Current member NCBI NM_010466.2 NP_034596.1 Accepted alive Link to Nucleotide Sequence:NM_010466.2Link to Protein Sequence:NP_034596.1Re-query CCDS DB by Nucleotide ID:NM_010466Re-query CCDS DB by Protein ID:NP_034596Link to BLAST:NP_034596.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034596.1 242 P09025 242 100% 0 0

Chromosomal Locations for CCDS 27894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102990780 102991215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102992563 102992855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGAGCTCCTACTTCGTCAACCCCCTGTTTTCCAAATACAAAGGCGGCGAGTCCCTGGAACCGGCCTATT
AC
GACTGCCGGTTCCCTCAGAGCGTGGGCAGAAGCCATGCGCTGGTGTACGGGCCCGGCGGCTCCGCGCC
C
GGTTTCCAGCACGCCTCGCACCACGTCCAAGACTTCTTCCACCACGGCACCTCCGGCATCTCCAACTCG
GGC
TACCAGCAGAACCCATGCTCGCTGAGCTGCCACGGAGACGCCTCCAAATTCTATGGCTACGAGGCGC
TC
CCCAGACAGTCCCTTTATGGGGCTCAGCAAGAGGCGAGCGTGGTGCAATATCCCGACTGTAAATCCTC
C
GCCAACACTAACAGTAGCGAAGGACAAGGCCACTTAAATCAGAACTCGTCTCCCAGCCTCATGTTTCCA
TGG
ATGAGACCCCACGCTCCTGGGCGGCGCAGCGGTCGACAAACTTACAGCCGGTATCAGACCTTGGAAC
TA
GAGAAGGAGTTTCTCTTTAATCCTTATTTGACCAGAAAGCGCCGGATTGAAGTCTCTCACGCCCTGGG
A
CTGACAGAAAGACAAGTGAAGATTTGGTTCCAGAATCGAAGGATGAAGTGGAAAAAGGAGAACAACAAG
GAT
AAACTGCCTGGGGCCCGAGATGAGGAGAAGGTGGAAGAAGAAGGGAATGAGGAAGAGGAGAAAGAGG
AG
GAGGAAAAGGAAGAAAATAAGGACTAA


Translation (242 aa):
MSSYFVNPLFSKYKGGESLEPAYYDCRFPQSVGRSHALVYGPGGSAPGFQHASHHVQDFFHHGTSGISNS
G
YQQNPCSLSCHGDASKFYGYEALPRQSLYGAQQEASVVQYPDCKSSANTNSSEGQGHLNQNSSPSLMFP
W
MRPH
APGRRSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLTERQVKIWFQNRRMKWKKENNK
D
KLPGARDEEKVEEEGNEEEEKEEEEKEENKD




Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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