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Report for CCDS27885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27885.1 Public Mus musculus 15 Map3k12 23 108 98 CCDS HistoryNCBI Gene:26404Re-query CCDS DB by CCDS ID:27885.1Re-query CCDS DB by GeneID:26404See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023812.9 ENSMUSP00000023812.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023812.9Link to Ensembl Protein Viewer:ENSMUSP00000023812.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000023812Re-query CCDS DB by Protein ID:ENSMUSP00000023812
Original member Current member EBI ENSMUST00000171565.7 ENSMUSP00000127629.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171565.7Link to Ensembl Protein Viewer:ENSMUSP00000127629.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171565Re-query CCDS DB by Protein ID:ENSMUSP00000127629
Original member Current member EBI ENSMUST00000169377.7 ENSMUSP00000133209.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169377.7Link to Ensembl Protein Viewer:ENSMUSP00000133209.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169377Re-query CCDS DB by Protein ID:ENSMUSP00000133209
Original member NCBI NM_001163643.1 NP_001157115.1 Updated not alive Link to Nucleotide Sequence:NM_001163643.1Link to Protein Sequence:NP_001157115.1Re-query CCDS DB by Nucleotide ID:NM_001163643Re-query CCDS DB by Protein ID:NP_001157115
Current member NCBI NM_001163643.2 NP_001157115.1 Accepted alive Link to Nucleotide Sequence:NM_001163643.2Link to Protein Sequence:NP_001157115.1Re-query CCDS DB by Nucleotide ID:NM_001163643Re-query CCDS DB by Protein ID:NP_001157115Link to BLAST:NP_001157115.1
Original member NCBI NM_001358844.1 NP_001345773.1 Updated not alive Link to Nucleotide Sequence:NM_001358844.1Link to Protein Sequence:NP_001345773.1Re-query CCDS DB by Nucleotide ID:NM_001358844Re-query CCDS DB by Protein ID:NP_001345773
Current member NCBI NM_001358844.2 NP_001345773.1 Accepted alive Link to Nucleotide Sequence:NM_001358844.2Link to Protein Sequence:NP_001345773.1Re-query CCDS DB by Nucleotide ID:NM_001358844Re-query CCDS DB by Protein ID:NP_001345773Link to BLAST:NP_001345773.1
Original member NCBI NM_009582.4 NP_033608.3 Updated not alive Link to Nucleotide Sequence:NM_009582.4Link to Protein Sequence:NP_033608.3Re-query CCDS DB by Nucleotide ID:NM_009582Re-query CCDS DB by Protein ID:NP_033608
Current member NCBI NM_009582.5 NP_033608.3 Accepted alive Link to Nucleotide Sequence:NM_009582.5Link to Protein Sequence:NP_033608.3Re-query CCDS DB by Nucleotide ID:NM_009582Re-query CCDS DB by Protein ID:NP_033608Link to BLAST:NP_033608.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157115.1 888 Q60700 888 100% 0 0
NP_001345773.1 888 Q60700 888 100% 0 0
NP_033608.3 888 Q60700 888 100% 0 0

Chromosomal Locations for CCDS 27885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 102500081 102500176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102500508 102500769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102500852 102500922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102501101 102501725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102501834 102501971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102502066 102502182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102502315 102502424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102502637 102502745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102503489 102503647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102503725 102503883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102504115 102504306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102504470 102504653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 102505090 102505534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2667 nt):
ATGGCCTGCCTCCATGAAACCCGAACACCCTCCCCTTCCTTTGGGGGCTTTGTGTCTACTCTAAGTGAGG
CTTCTATGCGAAAGCTGGATCCAGACACTTCAGACTGCACCCCCGAGAAAGACCTGACGCCCACCCAATG
TGTACTTCGAGATGTTGTGCCTCTCGGTGGGCAGGGTGGAGGAGGACCCAGCCCCTCCCCAGGTGGAGAG
CCTCCCCCAGAGCCTTTTGCCAATAGTGTCCTCCAGCTACATGAGCAGGATACAGGTGGGCCAGGGGGAG
CCACTGGGTCACCTGAGAGTCGAGCATCTAGAGTTCGAGCTGATGAGGTACGTCTGCAGTGCCAGAGTGG
CAGTGGCTTCCTTGAAGGTCTTTTTGGCTGCCTGCGCCCTGTCTGGACAATGATTGGCAAAGCCTACTCC
ACAGAACACAAGCAACAGCAGGAAGACCTTTGGGAAGTCCCCTTTGAGGAAATCCTGGACCTGCAGTGGG
TAGGCTCAGGGGCTCAGGGTGCTGTTTTCCTGGGACGCTTCCACGGGGAGGAGGTAGCTGTGAAGAAGGT
TCGAGATCTCAAGGAGACTGACATCAAGCATCTTCGAAAGCTGAAGCACCCCAACATCATCACTTTCAAG
GGTGTTTGCACACAGGCCCCCTGCTACTGCATCCTTATGGAATTCTGCGCTCAAGGACAGCTATATGAGG
TGCTCAGAGCCGGCCGCCCTGTCACCCCCTCCTTGCTGGTTGACTGGTCCATGGGCATCGCTGGTGGCAT
GAATTACCTGCACCTGCACAAGATTATCCACAGAGACCTGAAGTCACCCAACATGCTAATCACATACGAC
GATGTGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTG
CAGGAACAGTAGCCTGGATGGCTCCTGAAGTGATCAGAAATGAACCTGTGTCTGAGAAGGTTGACATCTG
GTCCTTTGGGGTGGTGCTATGGGAACTACTGACTGGAGAGATTCCCTACAAAGATGTAGATTCCTCAGCC
ATCATCTGGGGTGTGGGAAGCAACAGTCTCCACCTGCCTGTACCCTCCAGCTGCCCAGATGGTTTTAAAA
TTCTACTTCGCCAGTGCTGGAACAGCAAACCACGAAATCGCCCATCATTCCGACAGATCTTGCTGCACCT
GGACATCGCCTCCGCTGATGTGCTCTCTACACCCCAGGAGACTTACTTTAAGTCCCAGGCAGAGTGGCGG
GAAGAAGTAAAACTGCACTTTGAAAAGATTAAGTCAGAAGGGACCTGTCTGCACCGCCTAGAAGAGGAAC
TGGTGATGCGGAGAAGGGAGGAGCTCAGACATGCCCTGGACATCAGGGAGCACTATGAACGGAAGTTGGA
GAGAGCCAACAACCTGTACATGGAACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGAGAGGGAATTG
CTCAGGCGAGAGCAGGCTTTAGAAAGGCGGTGTCCTGGTCTACTAAAGTCACACCCTTCTCGGGGCCTCC
TACATGGAAACACTATGGAGAAGCTCATCAAGAAAAGGAACGTGCCACAGAAACTGTCGCCCCACAGCAA
AAGGCCAGATATTCTCAAGACAGAGTCGTTGCTACCTAAACTAGATGCAGCCCTAAGTGGGGTGGGGCTT
CCTGGGTGTCCTAAGGGCCCCCCTTCACCTGGAAGGAGTCGGCGTGGCAAGACCCGTCACCGAAAGGCCA
GTGCCAAGGGCAGCTGTGGAGACCTGCCTGGGCTTCGTGCAGCTTTGCCACCCCATGAGCCTGGAGGACT
AGGAAGCCCAGGGGGCCTAGGAGTGGGCCCTTCAGCTTGGGATGCTTGCCCCCCTGCTCTCCGTGGACTC
CACCATGACCTTCTACTCCGAAAGATGTCATCATCATCCCCAGACCTGCTATCAGCAGCGCTGGGAGCCC
GAGGCCGAGGGGCTACAGGGGGAGCTCGGGATCCTGGCTCACCACCTCCACCCCAGGGCGATACTCCTCC
AAGTGAGGGATCAGCTCCTGGTTCCACCAGCCCAGATTCGCCTGGGGGAGCTAAAGGGGAACCCCCTCCA
CCAGTAGGGCCTGGAGAAGGTGTGGGGCTGCTGGGAACTGGAAGGGAAGGGACTGCAGGCCGGGGAGGAA
ACCGGGCTGGGTCCCAGCACTTGACCCCCGCTGCGCTGCTGTACAGGGCTGCTGTGACTCGAAGTCAGAA
ACGTGGTATCTCATCTGAAGAAGAAGAAGGAGAGGTAGACAGTGAAGTAGAGCTACCCCCAAGTCAAAGG
TGGCCTCAGGGCCCGAACATGCGTCAGTCACTATCTACATTCAGCTCAGAGAACCCATCAGATGTGGAGG
AAGGTACAGCTAGTGAGCCTTCCCCAAGTGGCACACCAGAAGTTGGCAGTACCAACACTGATGAGCGACC
AGATGAACGATCTGATGACATGTGCTCACAGGGCTCAGAAATTCCACTGGACCTACCTACTTCAGAGGTG
GTCCCTGAACGTGAAGCCAGCTCCTTGCCCATGCAACACCAGGATGGCCAGGGCCCCAATCCTGAAGACT
CAGACTGTGACAGCACTGAATTGGACAACTCCAACAGCATTGATGCCTTGCGGCCCCCAGCCTCCCTTCC
TCCATGA

Translation (888 aa):
MACLHETRTPSPSFGGFVSTLSEASMRKLDPDTSDCTPEKDLTPTQCVLRDVVPLGGQGGGGPSPSPGGE
PPPEPFANSVLQLHEQDTGGPGGATGSPESRASRVRADEVRLQCQSGSGFLEGLFGCLRPVWTMIGKAYS
TEHKQQQEDLWEVPFEEILDLQWVGSGAQGAVFLGRFHGEEVAVKKVRDLKETDIKHLRKLKHPNIITFK
GVCTQAPCYCILMEFCAQGQLYEVLRAGRPVTPSLLVDWSMGIAGGMNYLHLHKIIHRDLKSPNMLITYD
DVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTGEIPYKDVDSSA
IIWGVGSNSLHLPVPSSCPDGFKILLRQCWNSKPRNRPSFRQILLHLDIASADVLSTPQETYFKSQAEWR
EEVKLHFEKIKSEGTCLHRLEEELVMRRREELRHALDIREHYERKLERANNLYMELNALMLQLELKEREL
LRREQALERRCPGLLKSHPSRGLLHGNTMEKLIKKRNVPQKLSPHSKRPDILKTESLLPKLDAALSGVGL
PGCPKGPPSPGRSRRGKTRHRKASAKGSCGDLPGLRAALPPHEPGGLGSPGGLGVGPSAWDACPPALRGL
HHDLLLRKMSSSSPDLLSAALGARGRGATGGARDPGSPPPPQGDTPPSEGSAPGSTSPDSPGGAKGEPPP
PVGPGEGVGLLGTGREGTAGRGGNRAGSQHLTPAALLYRAAVTRSQKRGISSEEEEGEVDSEVELPPSQR
WPQGPNMRQSLSTFSSENPSDVEEGTASEPSPSGTPEVGSTNTDERPDERSDDMCSQGSEIPLDLPTSEV
VPEREASSLPMQHQDGQGPNPEDSDCDSTELDNSNSIDALRPPASLPP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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