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Report for CCDS27795.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27795.1 Public Mus musculus 15 Lalba 23 108 98 CCDS HistoryNCBI Gene:16770Re-query CCDS DB by CCDS ID:27795.1Re-query CCDS DB by GeneID:16770See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27795.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023726.4 ENSMUSP00000023726.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023726.4Link to Ensembl Protein Viewer:ENSMUSP00000023726.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000023726Re-query CCDS DB by Protein ID:ENSMUSP00000023726
Original member Current member NCBI NM_010679.1 NP_034809.1 Accepted alive Link to Nucleotide Sequence:NM_010679.1Link to Protein Sequence:NP_034809.1Re-query CCDS DB by Nucleotide ID:NM_010679Re-query CCDS DB by Protein ID:NP_034809Link to BLAST:NP_034809.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034809.1 143 P29752 143 100% 0 0

Chromosomal Locations for CCDS 27795.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98480689 98480749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98481530 98481605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98482073 98482231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98482536 98482671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGATGCATTTCGTTCCTTTGTTCCTGGTGTGTATTTTGTCGTTGCCTGCCTTTCAAGCCACAGAGCTTA
CAAAATGCAAGGTGTCCCATGCCATTAAAGACATAGATGGCTATCAAGGCATCTCTTTGCTTGAATGGGC
CTGTGTTTTATTTCATACCAGTGGCTACGACACACAAGCTGTTGTCAACGACAACGGCAGCACAGAGTAC
GGACTCTTCCAGATCAGTGACAGATTTTGGTGTAAAAGTAGTGAGTTCCCCGAGTCGGAGAACATCTGTG
GCATCTCCTGTGACAAGTTATTGGATGACGAGTTGGATGATGACATAGCGTGTGCCAAGAAGATCCTGGC
TATCAAAGGAATCGACTACTGGAAAGCCTACAAGCCCATGTGCTCTGAGAAGCTTGAACAGTGGCGTTGT
GAGAAGCCCTGA

Translation (143 aa):
MMHFVPLFLVCILSLPAFQATELTKCKVSHAIKDIDGYQGISLLEWACVLFHTSGYDTQAVVNDNGSTEY
GLFQISDRFWCKSSEFPESENICGISCDKLLDDELDDDIACAKKILAIKGIDYWKAYKPMCSEKLEQWRC
EKP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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