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Report for CCDS27787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27787.1 Public Mus musculus 15 Asb8 23 108 98 CCDS HistoryNCBI Gene:78541Re-query CCDS DB by CCDS ID:27787.1Re-query CCDS DB by GeneID:78541See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27787.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059112.11 ENSMUSP00000057864.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059112.11Link to Ensembl Protein Viewer:ENSMUSP00000057864.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000059112Re-query CCDS DB by Protein ID:ENSMUSP00000057864
Original member Current member EBI ENSMUST00000143400.7 ENSMUSP00000115813.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143400.7Link to Ensembl Protein Viewer:ENSMUSP00000115813.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143400Re-query CCDS DB by Protein ID:ENSMUSP00000115813
Original member Current member EBI ENSMUST00000123922.1 ENSMUSP00000119481.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123922.1Link to Ensembl Protein Viewer:ENSMUSP00000119481.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123922Re-query CCDS DB by Protein ID:ENSMUSP00000119481
Original member Current member EBI ENSMUST00000123626.7 ENSMUSP00000121383.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000123626.7Link to Ensembl Protein Viewer:ENSMUSP00000121383.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000123626Re-query CCDS DB by Protein ID:ENSMUSP00000121383
Original member Current member NCBI NM_001170710.1 NP_001164181.1 Accepted alive Link to Nucleotide Sequence:NM_001170710.1Link to Protein Sequence:NP_001164181.1Re-query CCDS DB by Nucleotide ID:NM_001170710Re-query CCDS DB by Protein ID:NP_001164181Link to BLAST:NP_001164181.1
Original member Current member NCBI NM_001170711.1 NP_001164182.1 Accepted alive Link to Nucleotide Sequence:NM_001170711.1Link to Protein Sequence:NP_001164182.1Re-query CCDS DB by Nucleotide ID:NM_001170711Re-query CCDS DB by Protein ID:NP_001164182Link to BLAST:NP_001164182.1
Original member Current member NCBI NM_030121.4 NP_084397.3 Accepted alive Link to Nucleotide Sequence:NM_030121.4Link to Protein Sequence:NP_084397.3Re-query CCDS DB by Nucleotide ID:NM_030121Re-query CCDS DB by Protein ID:NP_084397Link to BLAST:NP_084397.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164181.1 288 Q91ZT9 288 99.6528% 0 1
NP_001164182.1 288 Q91ZT9 288 99.6528% 0 1
NP_084397.3 288 Q91ZT9 288 99.6528% 0 1

Chromosomal Locations for CCDS 27787.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 98135806 98136438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98141284 98141388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 98142651 98142779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (867 nt):
ATGAGTTCCAGCATGTGGTATATTATGCAGAGCATTCAGAGCAAATACTCCCTCTCCGAACGCCTGATCC
GAACCATCGCTGCCATCCGCTCCTTCCCACATGACAACGTAGAGGACCTCATCAGAGGGGGAGCAGATGT
GAACTGCACGCACGGCACACTGAAGCCCCTCCACTGTGCCTGCATGGTGTCCGACGCCGACTGCGTAGAG
CTCCTCCTGGAGAAGGGAGCAGAGGTCAATGCCCTGGATGGTTACAACCGAACGGCCCTCCACTATGCAG
CAGAGAAAGATGAGGCTTGTGTGGAGGTCCTACTGGAGTATGGGGCAAACCCCAATGCACTGGACGGCAA
CAGAGACACCCCGCTTCATTGGGCAGCCTTTAAGAACAATGCTGAGTGTGTGCGGGCTCTCCTGGAGAGC
GGGGCCTCCGTCAATGCCCTGGATTACAACAACGATACGCCGCTCAGCTGGGCTGCCATGAAGGGAAATC
TTGAGAGTGTCAGCATCCTTCTTGATTATGGTGCTGAGGTCAGAGTCATCAACTTAAAAGGCCAGACACC
CATCTCCCGCCTGGTGGCTCTGCTAGTGAGAGGACTTGGAACAGAAAAAGAAGACTCCTGCTTTGAGCTC
CTCCATAGAGCTGTTGGACAGTTTGAATTAAGGAAAAACGGCATCATGCCCCGAGAAGTGACCAAAGACC
AGCAGCTGTGTGAAAAACTGACTGTGTTGTGCTCAGCACCAGGGACGCTTAAAACCCTCGCCCGCTATGC
TGTGCGCCGTAGCCTCGGTCTCCAGTACCTGCCCGACGCAGTGAAGGGTCTCCCACTGCCAGTGTCTTTG
AAGGACTACCTGTTACTCTTGGAGTAG

Translation (288 aa):
MSSSMWYIMQSIQSKYSLSERLIRTIAAIRSFPHDNVEDLIRGGADVNCTHGTLKPLHCACMVSDADCVE
LLLEKGAEVNALDGYNRTALHYAAEKDEACVEVLLEYGANPNALDGNRDTPLHWAAFKNNAECVRALLES
GASVNALDYNNDTPLSWAAMKGNLESVSILLDYGAEVRVINLKGQTPISRLVALLVRGLGTEKEDSCFEL
LHRAVGQFELRKNGIMPREVTKDQQLCEKLTVLCSAPGTLKTLARYAVRRSLGLQYLPDAVKGLPLPVSL
KDYLLLLE


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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