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Report for CCDS27763.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27763.1 Public Mus musculus 15 Cntn1 23 108 98 CCDS HistoryNCBI Gene:12805Re-query CCDS DB by CCDS ID:27763.1Re-query CCDS DB by GeneID:12805See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27763.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000109.10 ENSMUSP00000000109.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000109.10Link to Ensembl Protein Viewer:ENSMUSP00000000109.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000000109Re-query CCDS DB by Protein ID:ENSMUSP00000000109
Original member Current member EBI ENSMUST00000068378.5 ENSMUSP00000067842.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068378.5Link to Ensembl Protein Viewer:ENSMUSP00000067842.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000068378Re-query CCDS DB by Protein ID:ENSMUSP00000067842
Original member Current member EBI ENSMUST00000169825.7 ENSMUSP00000133063.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169825.7Link to Ensembl Protein Viewer:ENSMUSP00000133063.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169825Re-query CCDS DB by Protein ID:ENSMUSP00000133063
Original member NCBI NM_001159647.1 NP_001153119.1 Updated not alive Link to Nucleotide Sequence:NM_001159647.1Link to Protein Sequence:NP_001153119.1Re-query CCDS DB by Nucleotide ID:NM_001159647Re-query CCDS DB by Protein ID:NP_001153119
Current member NCBI NM_001159647.2 NP_001153119.1 Accepted alive Link to Nucleotide Sequence:NM_001159647.2Link to Protein Sequence:NP_001153119.1Re-query CCDS DB by Nucleotide ID:NM_001159647Re-query CCDS DB by Protein ID:NP_001153119Link to BLAST:NP_001153119.1
Original member NCBI NM_001159648.1 NP_001153120.1 Updated not alive Link to Nucleotide Sequence:NM_001159648.1Link to Protein Sequence:NP_001153120.1Re-query CCDS DB by Nucleotide ID:NM_001159648Re-query CCDS DB by Protein ID:NP_001153120
Current member NCBI NM_001159648.2 NP_001153120.1 Accepted alive Link to Nucleotide Sequence:NM_001159648.2Link to Protein Sequence:NP_001153120.1Re-query CCDS DB by Nucleotide ID:NM_001159648Re-query CCDS DB by Protein ID:NP_001153120Link to BLAST:NP_001153120.1
Original member NCBI NM_001358051.1 NP_001344980.1 Updated not alive Link to Nucleotide Sequence:NM_001358051.1Link to Protein Sequence:NP_001344980.1Re-query CCDS DB by Nucleotide ID:NM_001358051Re-query CCDS DB by Protein ID:NP_001344980
Current member NCBI NM_001358051.2 NP_001344980.1 Accepted alive Link to Nucleotide Sequence:NM_001358051.2Link to Protein Sequence:NP_001344980.1Re-query CCDS DB by Nucleotide ID:NM_001358051Re-query CCDS DB by Protein ID:NP_001344980Link to BLAST:NP_001344980.1
Original member NCBI NM_007727.2 NP_031753.1 Updated not alive Link to Nucleotide Sequence:NM_007727.2Link to Protein Sequence:NP_031753.1Re-query CCDS DB by Nucleotide ID:NM_007727Re-query CCDS DB by Protein ID:NP_031753
Current member NCBI NM_007727.3 NP_031753.1 Accepted alive Link to Nucleotide Sequence:NM_007727.3Link to Protein Sequence:NP_031753.1Re-query CCDS DB by Nucleotide ID:NM_007727Re-query CCDS DB by Protein ID:NP_031753Link to BLAST:NP_031753.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153119.1 1020 P12960 1020 100% 0 0
NP_001153120.1 1020 P12960 1020 100% 0 0
NP_001344980.1 1020 P12960 1020 100% 0 0
NP_031753.1 1020 P12960 1020 100% 0 0

Chromosomal Locations for CCDS 27763.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 92216387 92216447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92220447 92220479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92228623 92228755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92232101 92232273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92234425 92234520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92242891 92243097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92245728 92245827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92245961 92246142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92250859 92250983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92252397 92252514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92253910 92254060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92255847 92255974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92261473 92261654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92271234 92271354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92291608 92291766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92294988 92295137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92302954 92303024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92305029 92305263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92309955 92310058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92314488 92314674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92317027 92317139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92317917 92318073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 92339513 92339589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3063 nt):
ATGAAAATGCCATTGCTGGTCAGCCATCTCCTGCTAATCTCCTTAACATCTTGTCTAGGAGACTTTACCT
GGCACAGAAGATATGGTCATGGAGTGTCTGAGGAGGACAAAGGATTTGGGCCCATTTTTGAAGAGCAGCC
AATCAATACCATTTACCCAGAAGAGTCACTGGAAGGAAAAGTGTCACTCAACTGCCGGGCACGCGCCAGC
CCATTTCCAGTTTACAAATGGAGAATGAATAACGGGGACGTGGACCTGACAAACGATCGGTACAGTATGG
TCGGAGGAAACCTTGTTATCAACAACCCGGACAAACAGAAAGACGCTGGGGTGTACTACTGCCTGGCATC
CAACAACTACGGAATGGTCAGGAGCACGGAGGCAACTCTGAGCTTCGGGTATCTCGACCCCTTTCCTCCC
GAGGAGCGTCCGGAAGTGAAGGTGAAGGAAGGGAAGGGCATGGTGCTTCTCTGTGATCCTCCCTACCACT
TCCCAGATGATCTTAGCTACCGCTGGCTTCTGAATGAATTTCCTGTATTTATCACCATGGATAAGCGAAG
ATTTGTGTCTCAGACCAACGGCAATCTCTACATCGCAAATGTCGAGTCTTCTGACAGAGGCAACTACTCC
TGCTTTGTGTCCAGTCCTTCTATTACAAAGAGTGTGTTCAGCAAGTTTATTCCCCTCATTCCGATTCCTG
AACGAACAACAAAGCCATATCCTGCTGATATTGTGGTGCAGTTCAAGGACATATACACCATGATGGGCCA
AAATGTGACTTTAGAGTGTTTCGCTCTAGGGAACCCTGTTCCTGATATCCGGTGGCGGAAGGTGCTAGAA
CCAATGCCCAGCACTGCTGAGATAAGCACGTCAGGGGCTGTCCTCAAGATCTTCAACATCCAGCTAGAAG
ATGAAGGCCTCTACGAGTGTGAGGCTGAGAACATCCGGGGAAAGGACAAGCACCAGGCAAGAATCTATGT
TCAAGCGTTTCCTGAGTGGGTAGAGCATATCAATGACACTGAGGTGGACATAGGCAGTGACCTCTACTGG
CCTTGCATAGCCACAGGGAAGCCCATTCCTACCATCAGGTGGCTGAAAAATGGATACTCGTATCACAAAG
GGGAACTGAGACTGTATGATGTGACTTTTGAAAATGCCGGGATGTACCAGTGCATAGCAGAAAACGCGTA
TGGGTCCATTTATGCCAACGCTGAGCTCAAGATCCTGGCTTTAGCTCCAACTTTTGAAATGAATCCTATG
AAGAAAAAGATCTTGGCTGCGAAAGGTGGAAGGGTTATCATTGAATGTAAACCCAAGGCCGCACCAAAAC
CCAAGTTTTCATGGAGCAAAGGGACGGAGTGGCTCGTTAACAGCAGCAGAATACTCATATGGGAAGATGG
TAGCTTGGAAATCAATAATATTACAAGAAATGATGGTGGAATCTATACATGCTTTGCAGAAAATAACAGA
GGAAAAGCTAATAGCACTGGGACTCTGGTGATCACAAATCCCACACGAATTATTTTGGCCCCAATCAATG
CTGACATCACTGTTGGGGAAAATGCCACCATGCAGTGTGCTGCGTCTTTCGATCCTGCCTTGGACCTCAC
GTTTGTGTGGTCCTTCAATGGCTACGTGATTGACTTTAACAAGGAAATTACGCATATCCATTACCAGAGG
AATTTTATGCTCGACGCCAATGGGGAACTGCTCATCCGAAATGCGCAGCTGAAACACGCAGGCCGGTACA
CGTGCACGGCGCAGACAATCGTGGACAATTCCTCGGCTTCCGCTGACCTTGTCGTTCGAGGCCCCCCAGG
TCCCCCAGGAGGCCTGAGAATAGAAGACATCAGAGCTACCTCTGTGGCACTGACTTGGAGCCGTGGTTCC
GACAATCACAGCCCTATCTCTAAATACACGATCCAGACCAAGACGATTCTCTCAGATGACTGGAAAGATG
CGAAGACAGATCCCCCAATCATTGAAGGAAACATGGAGTCAGCAAAAGCAGTGGATTTGATCCCTTGGAT
GGAGTATGAATTTCGAGTGGTGGCGACCAATACTTTAGGGACAGGAGAGCCCAGCATACCCTCAAACAGG
ATCAAAACAGACGGTGCTGCACCAAATGTGGCTCCCTCAGATGTAGGCGGTGGGGGCGGAACCAACAGAG
AGCTGACAATAACGTGGGCGCCTTTGTCGAGAGAGTACCATTACGGTAACAATTTTGGTTACATAGTGGC
GTTTAAGCCATTTGATGGAGAAGAGTGGAAGAAAGTGACTGTGACTAACCCAGACACTGGCCGCTACGTC
CACAAAGATGAGACCATGACCCCCTCCACCGCGTTTCAAGTCAAAGTGAAAGCCTTCAACAATAAAGGAG
ATGGGCCCTACAGCCTCGTAGCTGTCATCAACTCTGCACAAGATGCTCCCAGTGAAGCCCCCACAGAGGT
AGGGGTCAAAGTGTTATCATCCTCTGAGATATCTGTCCATTGGAAGCATGTGTTAGAGAAAATTGTGGAA
AGCTATCAGATTCGGTACTGGGCTGGGCATGACAAAGAAGCAGCCGCACACAGAGTTCAGGTCACCAGCC
AGGAGTACTCAGCCAGACTGGAGAACCTTCTTCCCGACACCCAGTACTTCATTGAAGTGGGAGCCTGCAA
CAGTGCCGGATGCGGACCTTCCAGTGATGTGATCGAGACCTTCACCAGAAAAGCCCCTCCTAGCCAACCA
CCAAGGATCATCAGTTCGGTGAGATCTGGCTCACGATATATAATCACATGGGATCACGTTGTGGCACTAT
CCAATGAATCTACTGTGACAGGCTACAAGATACTCTATAGACCGGATGGCCAACATGACGGCAAGCTGTT
CTCAACCCATAAACACTCCATAGAAGTCCCCATCCCCAGAGACGGAGAGTATGTTGTCGAGGTTCGAGCA
CACAGCGACGGGGGAGACGGAGTCGTGTCTCAAGTCAAAATTTCAGGCGTGTCCACGCTGTCTTCGAGTC
TCCTCAGCTTGCTCCTGCCCTCCCTTGGCTTTCTTGTCTACTCGGAATTCTGA

Translation (1020 aa):
MKMPLLVSHLLLISLTSCLGDFTWHRRYGHGVSEEDKGFGPIFEEQPINTIYPEESLEGKVSLNCRARAS
PFPVYKWRMNNGDVDLTNDRYSMVGGNLVINNPDKQKDAGVYYCLASNNYGMVRSTEATLSFGYLDPFPP
EERPEVKVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVESSDRGNYS
CFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDIYTMMGQNVTLECFALGNPVPDIRWRKVLE
PMPSTAEISTSGAVLKIFNIQLEDEGLYECEAENIRGKDKHQARIYVQAFPEWVEHINDTEVDIGSDLYW
PCIATGKPIPTIRWLKNGYSYHKGELRLYDVTFENAGMYQCIAENAYGSIYANAELKILALAPTFEMNPM
KKKILAAKGGRVIIECKPKAAPKPKFSWSKGTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAENNR
GKANSTGTLVITNPTRIILAPINADITVGENATMQCAASFDPALDLTFVWSFNGYVIDFNKEITHIHYQR
NFMLDANGELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVRGPPGPPGGLRIEDIRATSVALTWSRGS
DNHSPISKYTIQTKTILSDDWKDAKTDPPIIEGNMESAKAVDLIPWMEYEFRVVATNTLGTGEPSIPSNR
IKTDGAAPNVAPSDVGGGGGTNRELTITWAPLSREYHYGNNFGYIVAFKPFDGEEWKKVTVTNPDTGRYV
HKDETMTPSTAFQVKVKAFNNKGDGPYSLVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWKHVLEKIVE
SYQIRYWAGHDKEAAAHRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPSSDVIETFTRKAPPSQP
PRIISSVRSGSRYIITWDHVVALSNESTVTGYKILYRPDGQHDGKLFSTHKHSIEVPIPRDGEYVVEVRA
HSDGGDGVVSQVKISGVSTLSSSLLSLLLPSLGFLVYSEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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