NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27468.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27468.1 Public Mus musculus 15 Tnfrsf11b 23 108 98 CCDS HistoryNCBI Gene:18383Re-query CCDS DB by CCDS ID:27468.1Re-query CCDS DB by GeneID:18383See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27468.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079772.3 ENSMUSP00000078705.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079772.3Link to Ensembl Protein Viewer:ENSMUSP00000078705.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079772Re-query CCDS DB by Protein ID:ENSMUSP00000078705
Original member NCBI NM_008764.3 NP_032790.3 Updated not alive Link to Nucleotide Sequence:NM_008764.3Link to Protein Sequence:NP_032790.3Re-query CCDS DB by Nucleotide ID:NM_008764Re-query CCDS DB by Protein ID:NP_032790
Current member NCBI NM_008764.4 NP_032790.3 Accepted alive Link to Nucleotide Sequence:NM_008764.4Link to Protein Sequence:NP_032790.3Re-query CCDS DB by Nucleotide ID:NM_008764Re-query CCDS DB by Protein ID:NP_032790Link to BLAST:NP_032790.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032790.3 401 O08712 401 100% 0 0

Chromosomal Locations for CCDS 27468.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 54251994 54252382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 54254041 54254265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 54255985 54256176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 54259804 54260170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 54278215 54278247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGAACAAGTGGCTGTGCTGCGCACTCCTGGTGCTCCTGGACATCATTGAATGGACAACCCAGGAAACCC
TTCCTCCAAAGTACTTGCATTATGACCCAGAAACTGGTCATCAGCTCCTGTGTGACAAATGTGCTCCTGG
CACCTACCTAAAACAGCACTGCACAGTGAGGAGGAAGACATTGTGTGTCCCTTGCCCTGACCACTCTTAT
ACGGACAGCTGGCACACCAGTGATGAGTGTGTGTATTGCAGCCCAGTGTGCAAGGAACTGCAGTCCGTGA
AGCAGGAGTGCAACCGCACCCACAACCGAGTGTGTGAGTGTGAGGAAGGGCGTTACCTGGAGATCGAATT
CTGCTTGAAGCACCGGAGCTGTCCCCCGGGCTCCGGCGTGGTGCAAGCTGGAACCCCAGAGCGAAACACA
GTTTGCAAAAAATGTCCAGATGGGTTCTTCTCAGGTGAGACTTCATCGAAAGCACCCTGTATAAAACACA
CGAACTGCAGCACATTTGGCCTCCTGCTAATTCAGAAAGGAAATGCAACACATGACAACGTGTGTTCCGG
AAACAGAGAAGCCACGCAAAAGTGTGGAATAGATGTCACCCTGTGTGAAGAGGCCTTCTTCAGGTTTGCT
GTTCCTACCAAGATTATACCAAATTGGCTGAGTGTTTTGGTGGACAGTTTGCCTGGGACCAAAGTGAATG
CCGAGAGTGTAGAGAGGATAAAACGGAGACACAGCTCACAAGAGCAAACCTTCCAGCTGCTGAAGCTGTG
GAAACATCAAAACAGAGACCAGGAAATGGTGAAGAAGATCATCCAAGACATTGACCTCTGTGAAAGCAGC
GTGCAGCGGCATCTCGGCCACTCGAACCTCACCACAGAGCAGCTTCTTGCCTTGATGGAGAGCCTGCCTG
GGAAGAAGATCAGCCCAGAAGAGATTGAGAGAACGAGAAAGACCTGCAAATCGAGCGAGCAGCTCCTGAA
GCTACTCAGTTTATGGAGGATCAAAAATGGTGACCAAGACACCTTGAAGGGCCTGATGTATGCCCTCAAG
CACTTGAAAACATCCCACTTTCCCAAAACTGTCACCCACAGTCTGAGGAAGACCATGAGGTTCCTGCACA
GCTTCACAATGTACAGACTGTATCAGAAGCTCTTTTTAGAAATGATAGGGAATCAGGTTCAATCCGTGAA
AATAAGCTGCTTATAA

Translation (401 aa):
MNKWLCCALLVLLDIIEWTTQETLPPKYLHYDPETGHQLLCDKCAPGTYLKQHCTVRRKTLCVPCPDHSY
TDSWHTSDECVYCSPVCKELQSVKQECNRTHNRVCECEEGRYLEIEFCLKHRSCPPGSGVVQAGTPERNT
VCKKCPDGFFSGETSSKAPCIKHTNCSTFGLLLIQKGNATHDNVCSGNREATQKCGIDVTLCEEAFFRFA
VPTKIIPNWLSVLVDSLPGTKVNAESVERIKRRHSSQEQTFQLLKLWKHQNRDQEMVKKIIQDIDLCESS
VQRHLGHSNLTTEQLLALMESLPGKKISPEEIERTRKTCKSSEQLLKLLSLWRIKNGDQDTLKGLMYALK
HLKTSHFPKTVTHSLRKTMRFLHSFTMYRLYQKLFLEMIGNQVQSVKISCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH