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Report for CCDS27464.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27464.1 Public Mus musculus 15 Slc30a8 23 108 98 CCDS HistoryNCBI Gene:239436Re-query CCDS DB by CCDS ID:27464.1Re-query CCDS DB by GeneID:239436See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27464.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037240.2 ENSMUSP00000035257.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037240.2Link to Ensembl Protein Viewer:ENSMUSP00000035257.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000037240Re-query CCDS DB by Protein ID:ENSMUSP00000035257
Original member Current member NCBI NM_172816.4 NP_766404.1 Accepted alive Link to Nucleotide Sequence:NM_172816.4Link to Protein Sequence:NP_766404.1Re-query CCDS DB by Nucleotide ID:NM_172816Re-query CCDS DB by Protein ID:NP_766404Link to BLAST:NP_766404.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766404.1 367 Q8BGG0 367 100% 0 0

Chromosomal Locations for CCDS 27464.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 52295886 52295956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 52306450 52306646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 52317275 52317421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 52321699 52321852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 52325560 52325710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 52331567 52331672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 52333521 52333655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 52335122 52335264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGAGTTTCTTGAGAGAACTTATCTTGTGAATGATCAAGCCACCAAGATGTACGCCTTCCCTCTAGACA
GAGAACTTCGACAGAAGCCTGTGAATAAAGATCAGTGTCCTGGAGACAGGCCAGAGCATCCAGAGGCAGG
AGGCATCTATCACTGCCACAACAGCGCCAAGGCCACAGGGAACAGGTCGAGCAAGCAAGCGCATGCCAAG
TGGAGACTCTGTGCTGCTTCAGCAATATGCTTCATCTTTATGGTGGCAGAGGTGGTGGGTGGACACGTTG
CTGGGAGTCTGGCTATCCTCACTGATGCGGCTCATCTCTTAATTGACCTGACTAGTTTCCTGCTCAGTCT
CTTTTCTTTGTGGTTGTCATCGAGGCCCCCTTCCAAGCGGCTGACATTTGGGTGGTATCGAGCAGAGATC
CTCGGTGCCCTGCTGTCTGTCCTTTGCATCTGGGTGGTGACTGGTGTGCTGCTGTACCTTGCCTGTGAGC
GCCTTTTGTATCCTGATTACCAGATCCAAGCAGGTATCATGATCACTGTTTCAGGCTGTGCAGTGGCAGC
CAACATTGTACTAACTATGATTTTGCACCAACGGAACTTTGGCTACAACCACAAGGATGTACAAGCTAAT
GCCAGTGTCCGAGCAGCCTTTGTGCATGCCCTGGGGGATGTATTTCAGAGCATCAGTGTGCTAATTAGTG
CTCTCATTATCTACTTTAAGCCTGACTACAAAATTGCTGATCCAGTGTGCACATTTATCTTTTCCATCCT
GGTTTTGGCCAGCACCGTCATGATCTTAAAAGACTTCTCCATCTTACTCATGGAAGGTGTTCCAAAGGGC
CTGAGTTACAACAGTGTGAAAGAGATCATCCTCGCAGTTGATGGCGTGATCTCCGTGCACAGTCTACACA
TCTGGTCACTGACTGTGAACCAAGTGATTCTCTCTGTTCATGTTGCTACAGCTGCCAGCCAGGACAGCCA
GTCTGTGCGGACAGGAATTGCTCAAGCCCTCAGCAGCTTTGATCTTCACTCTCTTACCATTCAGATAGAA
TCTGCAGCAGACCAGGACCCCAGCTGCCTTCTCTGCGAAGACCCTCAGGACTAG

Translation (367 aa):
MEFLERTYLVNDQATKMYAFPLDRELRQKPVNKDQCPGDRPEHPEAGGIYHCHNSAKATGNRSSKQAHAK
WRLCAASAICFIFMVAEVVGGHVAGSLAILTDAAHLLIDLTSFLLSLFSLWLSSRPPSKRLTFGWYRAEI
LGALLSVLCIWVVTGVLLYLACERLLYPDYQIQAGIMITVSGCAVAANIVLTMILHQRNFGYNHKDVQAN
ASVRAAFVHALGDVFQSISVLISALIIYFKPDYKIADPVCTFIFSILVLASTVMILKDFSILLMEGVPKG
LSYNSVKEIILAVDGVISVHSLHIWSLTVNQVILSVHVATAASQDSQSVRTGIAQALSSFDLHSLTIQIE
SAADQDPSCLLCEDPQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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