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Report for CCDS27445.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27445.1 Public Mus musculus 15 Dpys 23 108 98 CCDS HistoryNCBI Gene:64705Re-query CCDS DB by CCDS ID:27445.1Re-query CCDS DB by GeneID:64705See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27445.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022915.10 ENSMUSP00000022915.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022915.10Link to Ensembl Protein Viewer:ENSMUSP00000022915.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000022915Re-query CCDS DB by Protein ID:ENSMUSP00000022915
Original member Current member EBI ENSMUST00000110306.8 ENSMUSP00000105935.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110306.8Link to Ensembl Protein Viewer:ENSMUSP00000105935.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110306Re-query CCDS DB by Protein ID:ENSMUSP00000105935
Original member Current member NCBI NM_001164466.1 NP_001157938.1 Accepted alive Link to Nucleotide Sequence:NM_001164466.1Link to Protein Sequence:NP_001157938.1Re-query CCDS DB by Nucleotide ID:NM_001164466Re-query CCDS DB by Protein ID:NP_001157938Link to BLAST:NP_001157938.1
Original member Current member NCBI NM_022722.3 NP_073559.3 Accepted alive Link to Nucleotide Sequence:NM_022722.3Link to Protein Sequence:NP_073559.3Re-query CCDS DB by Nucleotide ID:NM_022722Re-query CCDS DB by Protein ID:NP_073559Link to BLAST:NP_073559.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157938.1 519 Q9EQF5 519 100% 0 0
NP_073559.3 519 Q9EQF5 519 100% 0 0

Chromosomal Locations for CCDS 27445.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 39784598 39784714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39793227 39793434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39824166 39824308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39826864 39827005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39827975 39828131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39841923 39842112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39843858 39844037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39846609 39846767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 39857099 39857362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1560 nt):
ATGGCACCACAGGGACGACTTCTCATCCGCGGGGGTCGCATTGTCAATGACGACTTCTCACAGGTGGCCG
ATGTGCTAGTGGAGGACGGCGTGGTGCGGGCGCTGGGACGGGACCTGCTGCCTCCTGAGGACGCATCTCG
GGGGCTGCGAATCCTAGATGCAGCGGGCAAGCTCGTCCTGCCCGGGGGCATCGACACGCACACGCACATG
CAATTCCCGTTCATGGGCTCGCAGTCAGTGGACGACTTCTACCAGGGCACCAAGGCTGCTTTGGCAGGAG
GCACCACCATGATCATTGATTTTGCCATTCCTCAGAAAGGCAGCTCCCTCATCGAGGCCTTTGAGACTTG
GCGCAACTGGGCAGACCCGAAAGTCTGCTGTGACTATAGCCTGCATGTGGCAGTGACGTGGTGGAGCGAC
AAGGTAAAAGAAGAAATGAAAACCCTTGCCCGAGATAAAGGCGTTAACTCTTTCAAGATGTTTATGGCCT
ACAAAGGTCTGTACATGGTGCAAGACGAGCAGCTGTATGCGGCCTTCTCTCAGTGCAAGGAGATAGGAGC
GATTGCTCAGGTGCACGCCGAGAATGGAGATTTGATTGCAGAGGGAGCAAAGAAGATGCTGGCACTGGGG
ATAACAGGCCCTGAGGGGCACGAGCTGTGCCGTCCAGAAGCAGTGGAGGCAGAGGCCACCCTGAGAGCCA
TCACCATAGCCAGCGCTGTGAACTGCCCTTTATACGTCGTGCATGTGATGAGCAAATCTGCAGCGAAGGT
GGTAGCCGATGCGAGGAGAGCAGGAAATGTGGTCTATGGAGAACCAATTGCAGCGGGTCTCGGCACTGAT
GGCAGACAGTACTGGAGTGAAGAATGGAGCCATGCAGCCCACCATGTCATGGGTCCCCCACTGAGACCCG
ATCCTTTAACACCTGGCTTTCTTATGGATCTGTTGGCTAATGGCGATTTGACCACAACAGGGAGTGACAA
CTGCACTTTTAACACCTGCCAAAAAGCTCTAGGGAAGGATGACTTCACTAAGATTCCCAATGGGGTGAAT
GGTGTCGAGGACAGGATGTCGGTGATATGGGAAAAGGGCGTGCACAGTGGTAAAATGGATGAAAACAGGT
TTGTGGCAGTTACCAGCACAAACGCAGCCAAAATCTTTAATCTTTATCCGAAAAAAGGAAGAATAGCTGT
AGGCTCAGATGCTGACATTGTGATCTGGGACCCAGAAGCAACAAGGAGGATCTCAGCCAAAACTCATCAT
CAGGCCGTTAACTTCAACATCTTCGAGGGCATGGTTTGTCACGGGGTGCCCCTGGTGACTATTTCAAGAG
GCAGAGTGGTGTATGAAGCAGGTGTTTTCAACGTCACAGCAGGACATGGGAAGTTTATTCCCCGCCAACC
CTTTGCCGAATACATTTACAAACGAATCAAGCAGCGAGACCAGACCTGCACACCTGTGCCCGTGAAGCGC
GCCCCCTACAAGGGAGAAGTCACCACACTGAAAGCCAGAGAGACAAAAGAAGATGACACTGCTGGAACCA
GGATGCAGGGCCACTCCTGA

Translation (519 aa):
MAPQGRLLIRGGRIVNDDFSQVADVLVEDGVVRALGRDLLPPEDASRGLRILDAAGKLVLPGGIDTHTHM
QFPFMGSQSVDDFYQGTKAALAGGTTMIIDFAIPQKGSSLIEAFETWRNWADPKVCCDYSLHVAVTWWSD
KVKEEMKTLARDKGVNSFKMFMAYKGLYMVQDEQLYAAFSQCKEIGAIAQVHAENGDLIAEGAKKMLALG
ITGPEGHELCRPEAVEAEATLRAITIASAVNCPLYVVHVMSKSAAKVVADARRAGNVVYGEPIAAGLGTD
GRQYWSEEWSHAAHHVMGPPLRPDPLTPGFLMDLLANGDLTTTGSDNCTFNTCQKALGKDDFTKIPNGVN
GVEDRMSVIWEKGVHSGKMDENRFVAVTSTNAAKIFNLYPKKGRIAVGSDADIVIWDPEATRRISAKTHH
QAVNFNIFEGMVCHGVPLVTISRGRVVYEAGVFNVTAGHGKFIPRQPFAEYIYKRIKQRDQTCTPVPVKR
APYKGEVTTLKARETKEDDTAGTRMQGHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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