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Report for CCDS27401.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27401.2 Public Mus musculus 15 Marchf11 23 108 98 CCDS HistoryNCBI Gene:211147Re-query CCDS DB by CCDS ID:27401.2Re-query CCDS DB by GeneID:211147See the combined annotation on chromosome 15 in Sequence Viewer

Public Note for CCDS 27401.1
The coding region has been updated to represent an alternative splice pattern that is more supported by the available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27401.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000140840.7 ENSMUSP00000118729.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140840.7Link to Ensembl Protein Viewer:ENSMUSP00000118729.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140840Re-query CCDS DB by Protein ID:ENSMUSP00000118729
Original member Current member NCBI NM_177597.6 NP_808265.2 Accepted alive Link to Nucleotide Sequence:NM_177597.6Link to Protein Sequence:NP_808265.2Re-query CCDS DB by Nucleotide ID:NM_177597Re-query CCDS DB by Protein ID:NP_808265Link to BLAST:NP_808265.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808265.2 400 Q8CBH7-1 400 100% 0 0

Chromosomal Locations for CCDS 27401.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 26309262 26309792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 26310971 26311126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 26387748 26387940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 26409097 26409419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGAGCGACGAGGGCAAAAAACGGTCTAGCCGGGCGGACAGCCTCGAAGCTGAGCCACCTCTGCCCCCGC
CG
CCCCCACCCCCGCCTCCGGGAGAGTCGGTCCTGGTCCCCACCTCCCCACGCTACCGGCCGCCGCTGCC
C
GCGCCTCTGGAGCGCATCGTAGGGTCGGGCGAGCCGCCGGTAGAACTGGCCCCTCGGCGCAAGGGCGCA
GGA
GAGCCTCTACCGCCGCTGCCGCCGTCTCTGTTGCCCGGCGACCAGGAGGTGACAGCGGCGGGCGACT
CC
TGCGAAGGTCCTAGGCGCCTTCCAGAGGTGAAGCTCCCCGAGGCTGCGACGGGGAAAGGCAGCCCGGG
G
GAGCCCGAGGCCGGCGCGTGCCGGGAGGGCGAGCGGCGAGGCACCGGAGACCAGCCCGAAACACGCTCC
GTA
TGTAGCAGCCGCAGCAGCAGTAGTGGCGGCGGTAGCGACCAGCGCTCGGGGCACCAGCACCAGCACC
AT
CAGCCCATTTGCAAGATCTGCTTCCAGGGCGCAGAGCAGGGTGAGTTGTTAAATCCTTGCCGATGTGA
T
GGGTCTGTTCGATACACACATCAGCTGTGTCTTCTAAAGTGGATCAGTGAGAGAGGCTCCTGGACCTGC
GAG
CTGTGCTGTTATAGATACCACGTCACAGCCATTAAAATGAAGCAACCTTGCCAGTGGCAGAGCATTT
CT
ATAACACTGGTTGAGAAAGTTCAGATGATCGCTGTAATCCTAGGATCCCTGTTCTTAATAGCGAGTGT
G
ACTTGGCTCCTCTGGTCAGCCTTCAGCCCCTATGCAGTGTGGCAGAGGAAGGACATCCTTTTTCAAATC
TGC
TATGGAATGTATGGTTTTATGGATCTAGTGTGCATAGGCCTCATTGTGCATGAAGGAGCTGCCGTTT
AC
AGAGTGTTTAAGCGATGGCGAGCTGTTAATTTGCACTGGGATGTGTTAAATTATGACAAAGCCACAGA
C
ATTGAAGAAAGCAGCCGAGGAGAGTCTTCCACAAGTAGGACTTTGTGGCTACCATTGTCAGCTCTGAGG
AAC
AGGAACTTGGTCCACCCAACGCAACTAACCTCACCACGGTTTCAGTGTGGCTATGTGCTATTACATC
TA
TTCAATCGGATGAGGGCCCATGAAGATGTATCGGAAGATAACGGCTCTGGGGAGGTAGTGATGAGAGT
G
ACGTCTGTGTGA


Translation (400 aa):
MSDEGKKRSSRADSLEAEPPLPPPPPPPPPGESVLVPTSPRYRPPLPAPLERIVGSGEPPVELAPRRKGA
G
EPLPPLPPSLLPGDQEVTAAGDSCEGPRRLPEVKLPEAATGKGSPGEPEAGACREGERRGTGDQPETRS
V
CSSRSSSSGGGSDQRSGHQHQHHQPICKICFQGAEQ
GELLNPCRCDGSVRYTHQLCLLKWISERGSWTC
E
LCCYRYHVTAIKMKQPCQ
WQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQI
C
YGMYGFMDLVCI
GLIVHEGAAVYRVFKRWRAVNLHWDVLNYDKATDIEESSRGESSTSRTLWLPLSALR
N
RNLVHPTQLTSPRFQCGYVLLHLFNRMRAHEDVSEDNGSGEVVMRVTSV




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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