NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27387.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27387.1 Public Mus musculus 15 Sub1 23 108 98 CCDS HistoryNCBI Gene:20024Re-query CCDS DB by CCDS ID:27387.1Re-query CCDS DB by GeneID:20024See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27387.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022816.14 ENSMUSP00000022816.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022816.14Link to Ensembl Protein Viewer:ENSMUSP00000022816.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000022816Re-query CCDS DB by Protein ID:ENSMUSP00000022816
Original member Current member EBI ENSMUST00000110504.1 ENSMUSP00000106130.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110504.1Link to Ensembl Protein Viewer:ENSMUSP00000106130.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110504Re-query CCDS DB by Protein ID:ENSMUSP00000106130
Original member NCBI NM_011294.3 NP_035424.1 Updated not alive Link to Nucleotide Sequence:NM_011294.3Link to Protein Sequence:NP_035424.1Re-query CCDS DB by Nucleotide ID:NM_011294Re-query CCDS DB by Protein ID:NP_035424
Current member NCBI NM_011294.4 NP_035424.1 Accepted alive Link to Nucleotide Sequence:NM_011294.4Link to Protein Sequence:NP_035424.1Re-query CCDS DB by Nucleotide ID:NM_011294Re-query CCDS DB by Protein ID:NP_035424Link to BLAST:NP_035424.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035424.1 127 P11031 127 100% 0 0

Chromosomal Locations for CCDS 27387.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 11984218 11984297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11986456 11986564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11990959 11991081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 11993789 11993860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (384 nt):
ATGCCTAAATCAAAGGAACTTGTTTCTTCAAGCTCTTCAGGCAGTGATTCGGACAGCGAAGTTGAAAAAA
AGTTAAAGAGGAAAAAGCAAGCGGTTCCAGAGAAGCCCGTGAAGAAGCAGAAGCCTGGTGAGACTTCTAG
AGCACTGGCATCCTCCAAGCAGAGCAGCAGCAGCAGAGATGACAACATGTTCCAGATTGGAAAGATGAGA
TATGTCAGTGTTCGGGACTTCAAAGGAAAAATTCTAATTGATATTAGAGAATATTGGATGGATTCAGAAG
GTGAAATGAAACCAGGAAGAAAAGGTATTTCTTTAAACATGGAACAATGGAGCCAGCTGAAGGAACAGAT
CTCTGATATAGATGACGCAGTAAGAAAGCTGTAA

Translation (127 aa):
MPKSKELVSSSSSGSDSDSEVEKKLKRKKQAVPEKPVKKQKPGETSRALASSKQSSSSRDDNMFQIGKMR
YVSVRDFKGKILIDIREYWMDSEGEMKPGRKGISLNMEQWSQLKEQISDIDDAVRKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH