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Report for CCDS27303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27303.1 Public Mus musculus 14 Pcdh8 23 108 98 CCDS HistoryNCBI Gene:18530Re-query CCDS DB by CCDS ID:27303.1Re-query CCDS DB by GeneID:18530See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27303.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039568.10 ENSMUSP00000045333.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039568.10Link to Ensembl Protein Viewer:ENSMUSP00000045333.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039568Re-query CCDS DB by Protein ID:ENSMUSP00000045333
Original member NCBI NM_021543.4 NP_067518.2 Updated not alive Link to Nucleotide Sequence:NM_021543.4Link to Protein Sequence:NP_067518.2Re-query CCDS DB by Nucleotide ID:NM_021543Re-query CCDS DB by Protein ID:NP_067518
Current member NCBI NM_021543.5 NP_067518.2 Accepted alive Link to Nucleotide Sequence:NM_021543.5Link to Protein Sequence:NP_067518.2Re-query CCDS DB by Nucleotide ID:NM_021543Re-query CCDS DB by Protein ID:NP_067518Link to BLAST:NP_067518.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067518.2 1070 Q7TSK3-1 1070 100% 0 0

Chromosomal Locations for CCDS 27303.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 79767371 79767747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79768111 79768321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 79768497 79771121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3213 nt):
ATGAGTCCTGCGAAGCGCTGGGGCAGCCCTTGCCTTTTCCCCTTGCAGCTATTTAGTCTCTGCTGGGTGC
TCTCAGTGGCCCAGAGCAAGACAGTCCGATACAGCACGTTCGAAGAGGATGCCCCTGGCACAGTCATCGG
AACCCTTGCAGAAGACCTGCACATGAAAGTGTCTGGAGACACAAGCTTCCGCCTGATGAAGCAATTCAAC
AGCTCTCTGCTCCGGGTACGCGAGGGCGACGGGCAGCTGACCGTCGGGGATGCGGGCCTGGACCGTGAGC
GTCTGTGTGGCCCGTCCCCACAGTGCGTGCTGGCCTTCGATGTTGTCAGCTTCTCGCAGGAACAGTTCCG
CCTGGTGCACGTGGAGGTGGAGGTGAGGGATGTAAACGACCACGCGCCCCGCTTTCCCCGAGCCCAGATC
CCGGTGGAGGTCTCAGAGAGCGCTCCGGTAGGCACACGCATCCCCCTGGAGGTGCCCGTGGACGAGGACG
TGGGTGCCAACGGGCTGCAGAGTGTACGCCTAGCCGAGCCTCACAGCCCCTTCCGCGTGGAGCTGCAGAC
GCGCGCGGACGGTGCCCAGTGTGCGGACCTGGTGCTGCTACAGGAGTTGGACCGCGAGAGCCAGGCCTCC
TACAGCCTGGAGCTGGTGGCTCAGGATGGCGGGCGACCGCCGCGTTCCGCCACAGCAGCCCTCAGCGTGC
GTGTGCTAGATGCCAATGACCACAGCCCGGCCTTCCCACAGGGTGCCGTGGCAGAGGTGGAATTGGCCGA
GGACGCACCTGTGGGATCGCTGCTGCTCGACCTGGACGCTGCCGATCCCGACGAAGGTCCCAACGGCGAC
GTTGTGTTCACCTTCGGCGCCCGCACCCCTCCCGAAGCCCGCCACCTCTTCCGGCTCGACCCGCGCTCTG
GCCGCCTCACCTTGGCTGGGCAGGTGGACTACGAGCGCCAGGACACCTACGAGCTGGACGTGCGGGCTCA
AGACCGAGGTCCAGGGCCCCGGACAGCCACCTGCAAGGTTATCGTGCGCATCCGAGACGTCAACGACAAC
GCTCCTGAAATTTCTATCACTCCTCTGGCCGCCCCGGGGGCTCCAGCCACCTCGCCCTTCGCCGCCGCCG
CCGCTGCCGCCGCACTCGGAGGAGCGGACGCGGCCTCGTCGACTGGGTCCGGGACACAGGAAGCCGGTAT
CACCTCGCTGGTGCCAGAGGGGGCGGCGCGCGAGAGTCTAGTGGCGCTGGTCAGCACCTCGGACAGGGAC
TCGGGCGCCAACGGGCAGGTGCGCTGCGCCCTCTACGGGCACGAGCACTTTAGGCTGCAGCCGGCCTATG
CTGGCAGCTACCTGGTGGTGACCGCTGCATCTCTGGACCGGGAGCGCATCGCGGAGTACAACCTGACGCT
GGTGGCCGAAGACCGTGGCACACCCCCTCTTCGCACCGTCAGGCCCTACACCGTGCGAGTGGGGGACGAG
AACGACAACGCACCGATCTTCACCAAGCCAGTCTATGAGGTGTCGGTCCGCGAAAACAACCCTCCAGGCG
CCTACCTGGCCACAGTGGCAGCCCGCGACCCTGACGTGGGTCGCAACGGTCAAGTCACCTACCGCCTGGT
AGAGGCCGAAGTGGGCCGCTCTGGGGAAGCCGTGTCCACTTACGTCTCAGTAGACCCGGCTACCGGAGCC
ATCTACGCTCTCCGTAGTTTTGACTATGAGACTCTGCGCCAGCTTGACGTGCGTGTCCAGGCCAGCGACG
GCGGTTCCCCTCAGCTTTCCAGCAATGCTCTGGTGCAAGTGCGGGTGCTGGACCAGAATGATCATTCTCC
GATCCTTGTGCATCCGGCGCCGGCTAATGGCTCCCTAGAAGTAGCGGTCCCTGGACGTTCCACCAAGGAC
ACAGCTGTGGCGCGCATCCAGGCCCGGGATGCTGACGAAGGAGCCAACGGGGAACTGGCCTTTGATCTGC
TGCAGCAGGAGCCACGCGAGGCCTTCTCCATAGGCCGCCACACGGGGGAGATCATGCTTACTGGAGACCT
CTCGCAGGAGCCTCCTGGCCGCGTGTTCAAGGCCCTGCTGGTCATATCCGACGGCGGCCGTCCCCCTCTC
ACCACCACTGCAACCGTCAGTTTCGTGGTAACAGCCGGGGGCGGGTCAGCTGTGCCTGCCAGCTCCGGGA
GCCCAGAGCACTCCCGGCCACCCGGCTCTCGCCTCGCGCCGTCGGGGCCTTCGCTGCAGTGGGACACGCC
GCTGATCGTCATCATCGTGTTAGCCGGGAGCTGCACGCTGCTGCTTGCAGCCATCATCGCCATCGCCACC
ACCTGCAACCGCCGCAAGAAGGAGGTGCGCAAAGGGGGGGCCCTCCGGGAAGAGCGGCCCGGGGCGGCGG
GCGGCGGAGCCTCGGCCCCTGGCTCCCCGGATGAAACCGCCAGGGGAACTGGGCCCAGGCCCAACATGTT
CGACGTGCTCACCTTCCCTGGCAGCGGCAAAGCGCCCTTTGGCAGCCCCGCGGCCGACGCGCCCCCGCCC
GCGGTCGCCGCGGCCGAAGTGCCGGGCTCGGAGGGCGGCAGCGCCACTGGGGAAAGCGCCTGTCACTTCG
AGGGGCAGCAGCGGCTCCGAGGCGCGCACGCCGAGCCTTACGGTGCCTCTCCAGGCTTCGGGAAGGAGCC
TGCTGCGCCCCCTGTTGCAGTCTGGAAGGGTCATTCATTCAACACCATCTCGGGCCGAGAAGCTGAGAAG
TTCAGTGGGAAAGACAGCGGCAAAGGAGACAGTGATTTCAATGACAGTGACTCGGACATCAGCGGGGACG
CTTTGAAAAAAGACCTCATCAACCACATGCAGAGTGGACTGTGGGCGTGTACTGCTGAGTGCAAGATCCT
AGGTCATTCTGATCGCTGCTGGAGCCCATCCTGTGCCGGACCCAACGTACACCCCCCTCCTCACCCACCA
GCCCAGATGTCAACCTTCTGTAAGAGCACGTCCCTGCCTCGGGATCCTCTGCGCAGGGACAATTACTATC
AGGCCCAGCTCCCCAAGACAGTAGGGTTGCAGAGCGTCTATGAGAAAGTACTGCATAGAGACTATGACAG
GACAGTCACTTTACTCTCCCCTCCCCGTCCAGGAAGGCTCCCAGACCTGCAGGAGATTGGAGTACCCCTC
TATGAATCCCCTCCTGGTAGCAGATACGTGTCCCCGAAGAAGGGAATCAATGAAAATGTGTAA

Translation (1070 aa):
MSPAKRWGSPCLFPLQLFSLCWVLSVAQSKTVRYSTFEEDAPGTVIGTLAEDLHMKVSGDTSFRLMKQFN
SSLLRVREGDGQLTVGDAGLDRERLCGPSPQCVLAFDVVSFSQEQFRLVHVEVEVRDVNDHAPRFPRAQI
PVEVSESAPVGTRIPLEVPVDEDVGANGLQSVRLAEPHSPFRVELQTRADGAQCADLVLLQELDRESQAS
YSLELVAQDGGRPPRSATAALSVRVLDANDHSPAFPQGAVAEVELAEDAPVGSLLLDLDAADPDEGPNGD
VVFTFGARTPPEARHLFRLDPRSGRLTLAGQVDYERQDTYELDVRAQDRGPGPRTATCKVIVRIRDVNDN
APEISITPLAAPGAPATSPFAAAAAAAALGGADAASSTGSGTQEAGITSLVPEGAARESLVALVSTSDRD
SGANGQVRCALYGHEHFRLQPAYAGSYLVVTAASLDRERIAEYNLTLVAEDRGTPPLRTVRPYTVRVGDE
NDNAPIFTKPVYEVSVRENNPPGAYLATVAARDPDVGRNGQVTYRLVEAEVGRSGEAVSTYVSVDPATGA
IYALRSFDYETLRQLDVRVQASDGGSPQLSSNALVQVRVLDQNDHSPILVHPAPANGSLEVAVPGRSTKD
TAVARIQARDADEGANGELAFDLLQQEPREAFSIGRHTGEIMLTGDLSQEPPGRVFKALLVISDGGRPPL
TTTATVSFVVTAGGGSAVPASSGSPEHSRPPGSRLAPSGPSLQWDTPLIVIIVLAGSCTLLLAAIIAIAT
TCNRRKKEVRKGGALREERPGAAGGGASAPGSPDETARGTGPRPNMFDVLTFPGSGKAPFGSPAADAPPP
AVAAAEVPGSEGGSATGESACHFEGQQRLRGAHAEPYGASPGFGKEPAAPPVAVWKGHSFNTISGREAEK
FSGKDSGKGDSDFNDSDSDISGDALKKDLINHMQSGLWACTAECKILGHSDRCWSPSCAGPNVHPPPHPP
AQMSTFCKSTSLPRDPLRRDNYYQAQLPKTVGLQSVYEKVLHRDYDRTVTLLSPPRPGRLPDLQEIGVPL
YESPPGSRYVSPKKGINENV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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