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Report for CCDS27285.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27285.2 Public Mus musculus 14 Tsc22d1 23 108 98 CCDS HistoryNCBI Gene:21807Re-query CCDS DB by CCDS ID:27285.2Re-query CCDS DB by GeneID:21807See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 27285.2
The coding region has been updated to extend the N-terminus to one that is also supported by available conservation data. The use of an alternative upstream would result in a protein that is 21 aa longer.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27285.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048371.14 ENSMUSP00000044517.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048371.14Link to Ensembl Protein Viewer:ENSMUSP00000044517.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000048371Re-query CCDS DB by Protein ID:ENSMUSP00000044517
Original member Current member NCBI NM_207652.3 NP_997535.2 Accepted alive Link to Nucleotide Sequence:NM_207652.3Link to Protein Sequence:NP_997535.2Re-query CCDS DB by Nucleotide ID:NM_207652Re-query CCDS DB by Protein ID:NP_997535Link to BLAST:NP_997535.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_997535.2 1077 P62500-1 1077 99.8143% 0 2

Chromosomal Locations for CCDS 27285.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 76416083 76419009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76505249 76505297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 76506417 76506674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3234 nt):
ATGCACCAGCCGCCGGAGTCCACCGCCGCGGCGGCCGCTGCTGCAGACATTAGTGCTAGGAAGATGGCGC
ACCCGGCAATGTTCCCTCGAAGGGGCAGCGGTGGTGGCAGCGCCTCTGCTCTCAATGCAGCAGGTACGGG
CGTCAGTGGTGCTGCTCCATCTTCTGAAGATTTTCCTCCTCCTTCGCTGCTCCAGCCGCCGCCTCCTGCT
GCATCTTCCACGCAGGGACCCCAGCCTCCGCCTCCACAAAGCCTGAACCTCCTCTCGCAGGCTCAGCTGC
AGGGACAGCCTCTTGCGCCAGGCGGAACTCAGATGAAAAAGAAAAGTGGCTTCCAGATAACTAGCGTTAC
TCCGGCTCAGATCTCTGCCAGCATCAGCTCCAACAACAGCATCGCGGAGGACACCGAGAGCTACGACGAT
CTGGATGAGTCGCACACGGAAGATCTCTCCTCTTCCGAGATCCTCGACGTCTCCCTTTCCAGGGCCACTG
ACTTAGGTGAGCCTGAACGAAGCTCCTCAGAGGAGACTCTGAATAACTTCCAGGAAGCTGAGACACCTGG
GGCAGTCTCTCCTAACCAGCCCCACCTTCCTCAGCCTCATTTGCCTCACCTTCCACAACAGAACGTTGTG
ATCAATGGGAATGCCCATCCCCACCACCTCCATCATCACCATCACCCTCATCATGGGCACCACCTTCACC
ATGGGCACCATCATTCATCACATGCTGCTGTGGCCGGTCCATCCATTCCCGGAGGGCCACCCTCGAGCCC
AGTGTCCAGGAAACTCTCTACAACTGGAAGTTCTGATGGTGGTGTGCCAGTCGCACCTCCTCCTGCAGTA
CCATCGAGTGGCTTACCAGCATCAGTGATGACGAACATCCGTACTCCAAGTACTACAGGAAGCCTAGGTA
TAAATTCGGTTACTGGCACGAGCGCTACGAATAATGTTAACATTGCTGCTGTGGGTAGTTTCAGTCCCAG
TGTGACGAACAGCGTGCATGGTAATGCTAATATAAATACAAGCAATATCCCTAATGCTGCTAGCATAAGT
GGTGGGCCTGGAGTTACCAGTGTTGTTAATTCGAGTATCTTGAGTGGCATGGGCAATGGTACCGTTTCTT
CCTCTCCTGTTGCTAACAGTGTCCTTAATGCAGCTGCAGGTATCACTGTGGGAGTGGTTTCCAGTCAGCA
GCAGCAGCAGCAGCAGCAGCAACCAACAGTTAACACATCGAGGTTCAGGGTTGTGAAGTTAGACTCTACT
TCTGAACCCTTTAAAAAAGGTCGATGGACTTGCACAGAATTCTATGAGAAGGAAAACGCTGTGCCAGCTA
CAGAAGGCGTGGCCGTCAATAAAGTGGTGGAGACGGTGAAGCAAACCCCCACGGAAGCATCGTCCTCGGA
GAGGGAGAGCACTAGTGGGAGTTCTGTGAGCAGTAGTGTGAGCACACTGAGTCACTACACGGAGAGTGTG
GGAAGTGGAGAGATGATGGGAGCCCCGGCTGTGGTGGCGCCGCAGCAGCCGCCGCTACCACCAGCGCCTC
CAGGTCTTCAAGGTGTGGCTCTCCAACAGCTAGAGTTCAGTAGCCCTGCTCCACAGAGTATTGCGGCGGT
TAGTATGCCACAGAGTATTTCTCAGTCACAGATGTCACAAGTACAGTTACAGCCTCAAGAGTTGAGCTTT
CAGCAGAAGCAGACTCTTCAGCCTGTCCCTCTGCAAGCCACCATGAGTGCCGCAACTGGTATCCAGCCTT
CCCCTGTCAGCGTGGTCGGCATCACGGCGGCTGTAGGTCAGCAGCCTTCTGTTTCCAGCCTGGCTCAACC
GCAGCTGCCATATTCTCAGACAGCTCCTCCCGTGCAAACTCCTCTTCCAGGGGCACCACCCCAGCAGTTA
CAATATGGGCAGCAGCAACCAATGGTTCCTGCGCAGATAGCCCCAGGCCATGGCCAGCCAGTGACTCAAA
ATCCAACTTCAGAGTATGTGCAGCAGCAGCAGCAGCCAATATTTCAAGCAGCATTGTCCTCTGGGCAGTC
CAGTTCCACGGGCACGGGGGCAGGAATATCAGTGATTCCTGTGGCTCAGGCACAGGGGATCCAGCTGCCA
GGGCAGCCCACAGCAGTACAAACACAACCTGCAGGGGCGGCTGGGCAGCCCATTGGCCAGGCTCAAACAG
CAGTGTCCACTGTACCAACTGGCGGTCAGATTGCAAGTATCGGTCAACAGGCAAACATACCCACTGCAGT
ACAGCAGCCCTCTACCCAAGTTACACCTTCAGTTATTCAGCAAGGTGCTCCTCCATCTTCACAAGTAGTC
CTACCTGCTCCAACCGGGATCATTCATCAGGGAGTTCAAACCCGTGCTTCAAGCCTTCCACAACAATTGG
TCATTGCACCCCAGAGTACCTTGGTAACTGTGCCTCCCCAGCCACAGGGAGTAGAAACCGTGGCCCAAGG
GGTTGTTTCCCAGCAGTTGCCCACAGGCAGTCCTCTGCCCTCTGCTAGCACTATTTCTGTTACAAATCAG
GTTAGTTCAGCCGCTCCTTCTGGAATGCCTTCTGTCCCAACAAACTTAGTTCCACCACAGAATATAGCAC
AACCCCCAGCCACCCAAAATGGCAGTTTGGTTCAAAGTGTTAGTCAATCTCCCTTGATAGCCACTAACAT
AAATTTGCCTTTGGCACAACAGATACCACTAAGTTCTACTCAGTTCTCTACACAATCATTAGCTCAGGCC
ATTGGAAGCCAAATGGAAGATGCCAGGCGCCCAGCGGAGCCCTCCTTAGGCGGCTTACCTCAGACTATGA
GTGGTGACAGTGGGGGAATGTCAGCAGTTTCAGATGGGAGTAGCAGCAGCCTAGCAGCCCCTGCTTCTCT
CTTCCCGTTGAAGGTGCTACCGCTGACAACACCCCTGGTGGATGGCGAGGACGAGAGCTCTGGTGCAAGT
GTGGTAGCTATCGACAACAAAATAGAGCAAGCTATGGATCTGGTGAAAAGCCATTTGATGTATGCGGTGA
GGGAGGAAGTGGAAGTTCTGAAGGAGCAGATCAAAGAACTAATAGAGAAAAACTCCCAGCTGGAGCAGGA
GAACAATCTGCTGAAGACGCTGGCCAGTCCGGAGCAGCTCGCCCAGTTTCAGGCCCAGCTGCAGACTGGC
TCCCCTCCGGCCACCACGCAGCCACAGGGGACCACACAGCCCCCTGCACAGCCAGCATCCCAGGGCTCAG
GATCAACCGCATAG

Translation (1077 aa):
MHQPPESTAAAAAAADISARKMAHPAMFPRRGSGGGSASALNAAGTGVSGAAPSSEDFPPPSLLQPPPPA
ASSTQGPQPPPPQSLNLLSQAQLQGQPLAPGGTQMKKKSGFQITSVTPAQISASISSNNSIAEDTESYDD
LDESHTEDLSSSEILDVSLSRATDLGEPERSSSEETLNNFQEAETPGAVSPNQPHLPQPHLPHLPQQNVV
INGNAHPHHLHHHHHPHHGHHLHHGHHHSSHAAVAGPSIPGGPPSSPVSRKLSTTGSSDGGVPVAPPPAV
PSSGLPASVMTNIRTPSTTGSLGINSVTGTSATNNVNIAAVGSFSPSVTNSVHGNANINTSNIPNAASIS
GGPGVTSVVNSSILSGMGNGTVSSSPVANSVLNAAAGITVGVVSSQQQQQQQQQPTVNTSRFRVVKLDST
SEPFKKGRWTCTEFYEKENAVPATEGVAVNKVVETVKQTPTEASSSERESTSGSSVSSSVSTLSHYTESV
GSGEMMGAPAVVAPQQPPLPPAPPGLQGVALQQLEFSSPAPQSIAAVSMPQSISQSQMSQVQLQPQELSF
QQKQTLQPVPLQATMSAATGIQPSPVSVVGITAAVGQQPSVSSLAQPQLPYSQTAPPVQTPLPGAPPQQL
QYGQQQPMVPAQIAPGHGQPVTQNPTSEYVQQQQQPIFQAALSSGQSSSTGTGAGISVIPVAQAQGIQLP
GQPTAVQTQPAGAAGQPIGQAQTAVSTVPTGGQIASIGQQANIPTAVQQPSTQVTPSVIQQGAPPSSQVV
LPAPTGIIHQGVQTRASSLPQQLVIAPQSTLVTVPPQPQGVETVAQGVVSQQLPTGSPLPSASTISVTNQ
VSSAAPSGMPSVPTNLVPPQNIAQPPATQNGSLVQSVSQSPLIATNINLPLAQQIPLSSTQFSTQSLAQA
IGSQMEDARRPAEPSLGGLPQTMSGDSGGMSAVSDGSSSSLAAPASLFPLKVLPLTTPLVDGEDESSGAS
VVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELIEKNSQLEQENNLLKTLASPEQLAQFQAQLQTG
SPPATTQPQGTTQPPAQPASQGSGSTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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