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Report for CCDS27269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27269.1 Public Mus musculus 14 Itm2b 23 108 98 CCDS HistoryNCBI Gene:16432Re-query CCDS DB by CCDS ID:27269.1Re-query CCDS DB by GeneID:16432See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27269.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022704.8 ENSMUSP00000022704.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022704.8Link to Ensembl Protein Viewer:ENSMUSP00000022704.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022704Re-query CCDS DB by Protein ID:ENSMUSP00000022704
Original member Current member NCBI NM_008410.3 NP_032436.1 Accepted alive Link to Nucleotide Sequence:NM_008410.3Link to Protein Sequence:NP_032436.1Re-query CCDS DB by Nucleotide ID:NM_008410Re-query CCDS DB by Protein ID:NP_032436Link to BLAST:NP_032436.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032436.1 266 O89051 266 100% 0 0

Chromosomal Locations for CCDS 27269.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 73363058 73363143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73364542 73364692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73365752 73365862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73366321 73366527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73368299 73368427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 73385010 73385126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGGTGAAGGTGACGTTCAACTCGGCGCTGGCCCAGAAGGAGGCCAAGAAGGACGAGCCCAAGAGCAGCG
AGGAGGCGCTCATCGTCCCTCCGGATGCCGTGGCGGTGGATTGCAAGGACCCGGGTGACGTGGTTCCGGT
TGGACAGAGGAGAGCGTGGTGTTGGTGCATGTGTTTCGGACTGGCCTTCATGCTTGCTGGCGTCATCCTC
GGAGGGGCGTACCTGTACAAGTATTTTGCTCTTCAGCCAGATGATGTGTACTACTGTGGACTAAAGTACA
TCAAAGATGACGTCATCCTGAACGAGCCTTCTGCGGATGCCCCAGCTGCTCGCTACCAGACAATTGAAGA
GAACATTAAGATCTTTGAGGAAGACGCAGTGGAATTCATCAGTGTGCCTGTACCAGAGTTTGCGGACAGC
GATCCTGCCAACATTGTGCACGACTTCAACAAGAAACTCACTGCTTATTTGGACCTTAACCTGGACAAGT
GCTACGTGATTCCTCTGAACACTTCCATCGTTATGCCGCCCAAAAACCTGCTGGAGCTCCTTATTAACAT
TAAGGCCGGGACCTACCTGCCTCAGTCCTACCTTATCCATGAGCACATGGTGATCACCGACCGCATCGAG
AACGTGGACAACCTGGGCTTCTTCATCTACCGACTGTGTCACGACAAGGAGACCTACAAACTGCAGCGCC
GGGAAACAATTAGAGGTATTCAGAAGCGGGAAGCCAGTAACTGTTTCACCATTCGGCATTTTGAGAACAA
ATTTGCTGTGGAGACTTTAATTTGTTCTTGA

Translation (266 aa):
MVKVTFNSALAQKEAKKDEPKSSEEALIVPPDAVAVDCKDPGDVVPVGQRRAWCWCMCFGLAFMLAGVIL
GGAYLYKYFALQPDDVYYCGLKYIKDDVILNEPSADAPAARYQTIEENIKIFEEDAVEFISVPVPEFADS
DPANIVHDFNKKLTAYLDLNLDKCYVIPLNTSIVMPPKNLLELLINIKAGTYLPQSYLIHEHMVITDRIE
NVDNLGFFIYRLCHDKETYKLQRRETIRGIQKREASNCFTIRHFENKFAVETLICS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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