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Report for CCDS27249.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27249.1 Public Mus musculus 14 Sorbs3 23 108 98 CCDS HistoryNCBI Gene:20410Re-query CCDS DB by CCDS ID:27249.1Re-query CCDS DB by GeneID:20410See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27249.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022682.5 ENSMUSP00000022682.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022682.5Link to Ensembl Protein Viewer:ENSMUSP00000022682.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000022682Re-query CCDS DB by Protein ID:ENSMUSP00000022682
Original member NCBI NM_011366.3 NP_035496.1 Updated not alive Link to Nucleotide Sequence:NM_011366.3Link to Protein Sequence:NP_035496.1Re-query CCDS DB by Nucleotide ID:NM_011366Re-query CCDS DB by Protein ID:NP_035496
Current member NCBI NM_011366.4 NP_035496.1 Accepted alive Link to Nucleotide Sequence:NM_011366.4Link to Protein Sequence:NP_035496.1Re-query CCDS DB by Nucleotide ID:NM_011366Re-query CCDS DB by Protein ID:NP_035496Link to BLAST:NP_035496.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035496.1 733 Q9R1Z8 733 100% 0 0

Chromosomal Locations for CCDS 27249.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 70181170 70181231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70183666 70183772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70184007 70184107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70184828 70185136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70186859 70186984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70190728 70190842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70191016 70191062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70191148 70191200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70191433 70191575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70192086 70192147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70192607 70192693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70193406 70193459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70193561 70193647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70193861 70193951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70195413 70195506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70195923 70195961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70199282 70199345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70201349 70201542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70202931 70203048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70203272 70203416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 70207524 70207627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGGCCAGGATTCTTGGAGTGGGAAGATCTTCAGCTTCGTCTTTGAACAACAAAGAAGACAATGAAAGTG
ATGTAGCCCTTCTTAGTCCCAAGGACCCTAACAGAGTACACACGAAGGAGCAGCTGGCACATCCTGCGTC
CTCCAACCTTGACCCAAGCATGCAAGGCCTCCCTGCTGGGCTCAGCCTGGATGATTTCATCCCTGGTCAC
CTCCGAACCCATATAGGCTCATCCTCCCGGGGGACAAGGGTGCCAGTGATCCGGAATGGTGGCTCCAACA
CCCTTAATTTCCAGTTTCATGACCCTGCGCCCAGGACTGTGTGCAATGGCTGCCCCCCACCCAGGAGAGA
TGGTTCCTTGAATCCAGACCCAGCATGGTATCAGACCTGGCCAGGCCCTGGGAGCCGGCCCTCTATGAGC
CCGAAGCCACCTGCTTCCCAGCATGCCCAGAACTGGTCAGCCACATGGACCAAGGACAGCAAGCGACAGG
ACAAGCGCTGGGTGAAGTACGAGGGAATCGGGCCCGTGGATGAGAGCGGCATGCCCATTGCCCCCCGATC
TAGTGTTGACAGCCCCAGAGACTGGTATCGAAGAATGTTCCAGCAAATTCACCGGAAAATGCCAGACCTG
CAGCTGGACTGGACCTTGGAAGACCCACCCAAAGTGGTTTCCGCACGCGCCTCTTCTGCAGAACCCAGGC
ATCTAGGGACCCTGCAAAGACCTGCCTCCAGGCCTGGCACAACTGAGACTTCTAGCGGAAGAAACTGGAA
CCACTCTGAAGAGACATCTAGAAACACCTTTAACTATAATTTTAGACCATCCTCTTCAGGGCTTCATCCC
CCAAATCAGGTGCCTAGACATCGAGAGAAAGTAGAGAATGTCTGGACAGAAGATTCCTGGAACCAGTTTC
TGCACGAACTAGAAACTGGGCATAAGCCTAAGAAACCACTGGTGGATGACCCTGTTGAGAAGCCTGCACA
GCCCATTGAGGTCCTGCTAGAGAGAGAACTGGCCAAGCTGAGCGCAGAGCTGGACAAGGACCTGCGGGCC
ATTGAGACCCGCCTGCCGTCCCCCAAGAACTCTCAGGCTCCACGACGGCCCCTTGAGCAGCCCGGCTTGG
AGCAGCAGCCCTCAGCCCGTCTGTCCTCAGCCTGGAGGCCCAACTCACCGCATGCACCTTACTTCAGTTC
CTCCCGACCCCTGAGCCCCCACAGAATGGCAGATGGAGGAGGAAGCCCCTTTCTGGGACGTAGAGATTTT
GTCTACCCTTCCTCAGCCCGAGAGCCTAGCGCCTCTGAAAGGGGTAGCAGCCCTTCGAGGAAAGAAGAGA
AGAAGAGGAAGGCCGCCCGGCTCAAGTTTGACTTCCAGGCACAGTCCCCCAAGGAGCTGTCTCTGCAGAA
GGGTGACATTGTCTATATCCATAAGGAAGTGGACAAGAACTGGCTGGAGGGGGAACACCATGGCCGGCTG
GGCATCTTCCCAGCTAATTATGTGGAGGTTCTGCCTGCCGATGAGATTCCCAAGCCCATCAAGCCGCCCA
CATACCAGGTGCTGGAGTATGGCGATGCAGTAGCCCAGTATACCTTCAAGGGAGACCTGGAGGTAGAACT
GTCCTTCCGAAAGGGAGAACGCATCTGCCTGATCCGCAAGGTGAACGAACATTGGTATGAGGGGCGCATC
ACTGGCACTGGACGCCAGGGCATCTTCCCTGCCAGCTACGTGCAGATAAACCGAGAGCCCCGGCTCAGGC
TTTGTGATGATGGTCCCCAGCTCCCTGCATCACCTAACCCGACAACCACTGCTCACCTAAGCAGCCACTC
CCACCCCTCCTCAATACCTGTGGACCCCACTGACTGGGGAGGTCGAACCTCCCCTCGACGCTCCGCCTTT
CCCTTCCCCATCACCCTCCAGGAGCCCAGATCCCAAACCCAGAGTCTCAATACCCCTGGACCAACCCTGT
CCCATCCTCGAGCCACCAGCCGTCCCATAAACCTGGGACCCTCCTCCCCAAACACAGAGATACACTGGAC
TCCGTACCGGGCCATGTACCAGTACAGGCCCCAGAATGAGGACGAGCTGGAACTTCGAGAGGGGGACCGT
GTGGATGTCATGCAGCAATGTGACGATGGCTGGTTTGTGGGTGTCTCCCGGCGAACTCAGAAATTTGGGA
CATTCCCTGGAAATTATGTAGCCCCAGTGTGA

Translation (733 aa):
MARILGVGRSSASSLNNKEDNESDVALLSPKDPNRVHTKEQLAHPASSNLDPSMQGLPAGLSLDDFIPGH
LRTHIGSSSRGTRVPVIRNGGSNTLNFQFHDPAPRTVCNGCPPPRRDGSLNPDPAWYQTWPGPGSRPSMS
PKPPASQHAQNWSATWTKDSKRQDKRWVKYEGIGPVDESGMPIAPRSSVDSPRDWYRRMFQQIHRKMPDL
QLDWTLEDPPKVVSARASSAEPRHLGTLQRPASRPGTTETSSGRNWNHSEETSRNTFNYNFRPSSSGLHP
PNQVPRHREKVENVWTEDSWNQFLHELETGHKPKKPLVDDPVEKPAQPIEVLLERELAKLSAELDKDLRA
IETRLPSPKNSQAPRRPLEQPGLEQQPSARLSSAWRPNSPHAPYFSSSRPLSPHRMADGGGSPFLGRRDF
VYPSSAREPSASERGSSPSRKEEKKRKAARLKFDFQAQSPKELSLQKGDIVYIHKEVDKNWLEGEHHGRL
GIFPANYVEVLPADEIPKPIKPPTYQVLEYGDAVAQYTFKGDLEVELSFRKGERICLIRKVNEHWYEGRI
TGTGRQGIFPASYVQINREPRLRLCDDGPQLPASPNPTTTAHLSSHSHPSSIPVDPTDWGGRTSPRRSAF
PFPITLQEPRSQTQSLNTPGPTLSHPRATSRPINLGPSSPNTEIHWTPYRAMYQYRPQNEDELELREGDR
VDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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