NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27230.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27230.2 Public Mus musculus 14 Kctd9 23 108 98 CCDS HistoryNCBI Gene:105440Re-query CCDS DB by CCDS ID:27230.2Re-query CCDS DB by GeneID:105440See the combined annotation on chromosome 14 in Sequence Viewer

Public Note for CCDS 27230.1
The coding region has been updated to represent an alternate exon or splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 27230.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078053.12 ENSMUSP00000077200.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078053.12Link to Ensembl Protein Viewer:ENSMUSP00000077200.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078053Re-query CCDS DB by Protein ID:ENSMUSP00000077200
Original member Current member NCBI NM_134073.2 NP_598834.2 Accepted alive Link to Nucleotide Sequence:NM_134073.2Link to Protein Sequence:NP_598834.2Re-query CCDS DB by Nucleotide ID:NM_134073Re-query CCDS DB by Protein ID:NP_598834Link to BLAST:NP_598834.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598834.2 339 Q80UN1 339 100% 0 0

Chromosomal Locations for CCDS 27230.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 67716337 67716384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67724558 67724679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67726327 67726370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67728650 67728746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67729351 67729409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67729605 67729733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67733161 67733228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67733347 67733442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67737606 67737711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67738377 67738510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 67740296 67740412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGCGGCGGGTCACGCTGTTCTTGAACGGCAGCCCGAGCAACGGCAAGGTGGTTGCTGTATACGGAACTT
TGTCTGACTTGCTCTCAGTGGCCAGCAGTAAACTCGGCATAAAAGCCACCAGTGTATATAATGGGAAAGG
CGGACTGATTGATGATATTGCTTTGATCAGGGATGATGATGTGCTGTTTGTGTGTGAAGGAGAGCCGTTT
ATTGATCCTCAGACAGATGCTAGACCACCTGGAGGATTGCTAGGATCCCACACAGACTGGCTCACATTAA
ATGTAGGAGGACGATACTTCACAACAACAAGGAGCACTTTAGTGAATAAAGAGCCTGACAGTATGCTGGC
GCACATGTTCAAGGACAAAGGTGTCTGGGGAAATAAGCAAGATCATAGAGGAGCATTCTTAATTGACCGA
AGTCCTGAGTACTTTGAACCTATTTTGAACTACTTACGTCATGGACAGCTCATTGTAAATGATGGCATTA
ACTTATTGGGTGTGCTAGAAGAAGCCAGGTTTTTTGGTATTGACTCACTGATTGAACACCTAGAAGTGGC
CATAAAGAATTCCCAACCACCAGAGGATCATTCACCAATATCCCGAAAGGAATTTGTTCGATTTCTGCTG
GCCACTCCAACCAAGTCAGAGCTGCGCTGCCAGTGTGCAAATCTCCAGGGAGTCAAGATGCTCTGCTCAA
ACGCAGAAGGCGCATCCCTGAGGCTCTGTAATTTTGAGGATCCTTCGGGTCTTAAAGCCAACTTAGAGGG
TGCTAATCTGAAAGGTGTGGACATGGAAGGAAGCCAGATGACAGGGATTAACCTCAGAGTTGCCACCTTA
AAAAATGCAAAACTGAAGAACTGTAATCTCAGAGGAGCAACTCTGGCAGGAACCGATTTAGAAAACTGTG
ATTTGTCGGGGTGTGACCTCCAGGAAGCCAACCTGAGAGGCTCCAATGTGAAGGGTGCCATATTTGAAGA
GATGCTGACACCATTACATATGTCCCAGAGTGTCAGATGA

Translation (339 aa):
MRRVTLFLNGSPSNGKVVAVYGTLSDLLSVASSKLGIKATSVYNGKGGLIDDIALIRDDDVLFVCEGEPF
IDPQTDARPPGGLLGSHTDWLTLNVGGRYFTTTRSTLVNKEPDSMLAHMFKDKGVWGNKQDHRGAFLIDR
SPEYFEPILNYLRHGQLIVNDGINLLGVLEEARFFGIDSLIEHLEVAIKNSQPPEDHSPISRKEFVRFLL
ATPTKSELRCQCANLQGVKMLCSNAEGASLRLCNFEDPSGLKANLEGANLKGVDMEGSQMTGINLRVATL
KNAKLKNCNLRGATLAGTDLENCDLSGCDLQEANLRGSNVKGAIFEEMLTPLHMSQSVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH