CCDS Report for Consensus CDS

PubMed

Entrez

Gene

BLAST

OMIM

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Genome Displays

	Ensembl
	NCBI
	UCSC
	VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27191.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
27191.1	Public	Mus musculus	14	Ints6	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 27191.1

Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status
EBI	ENSMUST00000053959.6	ENSMUSP00000086788.4	Accepted	alive
EBI	ENSMUST00000223585.1	ENSMUSP00000152954.1	Accepted	alive
NCBI	NM_008715.2	NP_032741.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_032741.2	883	Q6PCM2-1	883	100%	0	0

Chromosomal Locations for CCDS 27191.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)

Genome Browser links:

Chromosome	Start	Stop
14	62693581	62693674
14	62695699	62695792
14	62696593	62696955
14	62700631	62700862
14	62702371	62702513
14	62703174	62703300
14	62704684	62704896
14	62705853	62705963
14	62707605	62707699
14	62708891	62709023
14	62709468	62709620
14	62713685	62713839
14	62714293	62714418
14	62716299	62716482
14	62743909	62743998
14	62759201	62759350
14	62760166	62760243
14	62760548	62760658

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2652 nt):
ATGCCCATCTTACTGTTCCTGATAGACACGTCTGCCTCTATGAACCAGCGCAGCCATCTGGGCACCACCT ACCTGGACACGGCCAAAGGCGCGGTAGAGACCTTCATGAAGCTCCGTGCCCGGGACCCTGCCAGCAGAGG AGACAGGTATATGCTGGTCACTTTCGAAGAGCCGCCCTATGCTATCAAGGCTGGATGGAAAGAAAACCAT GCAACGTTTATGAATGAACTGAAAAACCTTCAGGCAGAAGGACTTACGACTCTTGGCCAATCCCTAAGGA CAGCTTTTGATTTGTTAAATTTAAATAGATTAGTAACTGGCATAGACAACTATGGGCAGGGAAGAAACCC CTTTTTCTTGGAGCCAGCAATAATAATTACAATCACTGATGGGAGCAAGTTGACTACTACTAGTGGTGTC CAGGATGAGCTTCATTTACCTCTGAATTCGCCGTTGCCTGGAAGTGAATTGACCAAGGAACCTTTTCGTT GGGATCAGAGACTATTTGCTTTAGTGCTGCGGTTGCCTGGCACCATGTCGGTGGAATCAGAACAGTTGAC AGGTGTGCCTTTGGATGATTCTGCTATCACACCAATGTGTGAAGTGACAGGAGGCCGGTCATACTCTGTA TGTTCTCCAAGAATGCTTAATCAGTGTCTGGAATCCTTGGTGCAGAAAGTACAAAGTGGGGTGGTAATAA ACTTTGAAAAGGCAGGACCAGATCCTCCCCCTGCTGAAGAGGGGCAGCCAGATATATCAAGACCTTTTGG ATCTCAGCCTTGGCATAGCTGTCACAAGCTCATATATGTCAGACCAAATCCTAAAACTGGGGTTCCTATA GGCCATTGGCCTGTTCCAGAGTCTTTTTGGCCAGATCAGAATTCTCCAACACTACCACCTCGTACATCTC ATCCTGTAGTGAAGTTTTCCTGTACAGACTGTGAGCCAATGGTTATTGACAAATTGCCTTTTGACAAATA TGAGTTGGAACCTTCACCACTGACTCAGTTTATTCTAGAAAGGAAATCTCCTCAAACGTGTTGGCAGGTG TATGTGAGCAATAGTGCAAAGTATAATGAACTTGGCCATCCCTTTGGTTACTTGAAAGCTAGTACAGCAC TGACCTGTGTCAACTTATTTGTGATGCCTTACAATTACCCAGTCCTCCTTCCTCTATTAGATGACTTGTT CAAAGTGCACAAAGCAAAACCAACTCTGAAATGGAGACAGTCATTTGAAAGTTATTTGAAGACAATGCCT CCCTACTATCTTGGGCCCCTGAAGAAAGCTGTTAGAATGATGGGTGCACCTAATCTGATAGCAGACAGTA TGGAGTATGGACTCAGTTACAGTGTCATTTCATACCTCAAAAAATTGAGTCAACAGGCCAAAATTGAATC TGATAGAGTCATCGGATCCGTAGGCAAAAAAGTAGTACAGGAAACTGGAATTAAAGTCCGAAGCCGGTCA CATGGGTTGTCAATGGCGCATAGGAAAGGTTTTCAAGTGCTGCAGGGTATTTCGGAGGATGTCCCCCACA GGTTGCTAGACCTTAATATGAAGGAGTACACTGGGTTCCAGGTTGCTTTACTAAATAAGGATTTGAAGCC TCAGACCTTTAGAAACGCTTATGATATACCAAGACGGAACCTTCTGGATCATTTAACAAGAATGAGATCG AACCTTTTAAAGAGCACCCGCAAATTTCTTAAAGGCCAGGATGAAGATCAAGTGCACAGTGTACCTATAG CACAAATGGGGAATTACCAGGAATACCTCAAGCAAGTACCTTCTCCATTGAGAGAACTTGATCCTGATCA GCCTCGAAGGTTGCATACATTTGGCAATCCCTTTAAACTGGATAAAAAGGGTATGATGATAGATGAAGCA GATGAATTTGTGGCTGGACCTCAGAATAAACACAAGCGGCCTGGAGAGCCAAGCATGCAAGGGATCCCAA AAAGACGCCGGTGTGCCTCTCCACTCTTGAGAGGCCGAAGGCAGAGCCCTGCTGTGAACAGTCACATCGG AGGGAAAGGACCACCTGCACCCATGACGCAAGCACAGCCAGGTCTTATTAAACCCCTTCCTCTGCATAAA GAAGCCACTAATGATTCAATAGTAGATGATGTGGTTGAAAATCATGTTGCTGACCAACTTTCATCAGACA TGACACCAAATGCTATGGATACTGAATTTTTAACATCTCCCCCTAATCTTTTGGAACCATCAACCAATCA TACAGAGGCCCTTGGTCATGAACATTTAGGAAACAATGACCTCACTGTTGGTGGGTTTTTAGAAAATCAT GAGGAGCCAAGAAATAAAGAACAAAGTGCCGAAGAGAATATACCAGCATCTTCACTCAACAAAGGAAAGA AATTGATGCATTGTAGAAGCCATGAAGAGGTCAACACTGAACTAAAAGCACAAATAATGAAAGAGATCAG AAAGCCAGGAAGAAAATATGAAAGAATCTTCACCTTACTGAAGCATGTGCAAGGCAGTTTACAAACAAGG CTAATATTCTTACAAAATGTCATTAAGGAAGCATCCAGGTTTAAGAAACGAATGCTAATAGAACAACTGG AGAACTTCTTGGATGAAATTCATCGAAGAGCCAATCAAATCAACCATATTAATAGCAATTAA
Translation (883 aa):
MPILLFLIDTSASMNQRSHLGTTYLDTAKGAVETFMKLRARDPASRGDRYMLVTFEEPPYAIKAGWKENH ATFMNELKNLQAEGLTTLGQSLRTAFDLLNLNRLVTGIDNYGQGRNPFFLEPAIIITITDGSKLTTTSGV QDELHLPLNSPLPGSELTKEPFRWDQRLFALVLRLPGTMSVESEQLTGVPLDDSAITPMCEVTGGRSYSV CSPRMLNQCLESLVQKVQSGVVINFEKAGPDPPPAEEGQPDISRPFGSQPWHSCHKLIYVRPNPKTGVPI GHWPVPESFWPDQNSPTLPPRTSHPVVKFSCTDCEPMVIDKLPFDKYELEPSPLTQFILERKSPQTCWQV YVSNSAKYNELGHPFGYLKASTALTCVNLFVMPYNYPVLLPLLDDLFKVHKAKPTLKWRQSFESYLKTMP PYYLGPLKKAVRMMGAPNLIADSMEYGLSYSVISYLKKLSQQAKIESDRVIGSVGKKVVQETGIKVRSRS HGLSMAHRKGFQVLQGISEDVPHRLLDLNMKEYTGFQVALLNKDLKPQTFRNAYDIPRRNLLDHLTRMRS NLLKSTRKFLKGQDEDQVHSVPIAQMGNYQEYLKQVPSPLRELDPDQPRRLHTFGNPFKLDKKGMMIDEA DEFVAGPQNKHKRPGEPSMQGIPKRRRCASPLLRGRRQSPAVNSHIGGKGPPAPMTQAQPGLIKPLPLHK EATNDSIVDDVVENHVADQLSSDMTPNAMDTEFLTSPPNLLEPSTNHTEALGHEHLGNNDLTVGGFLENH EEPRNKEQSAEENIPASSLNKGKKLMHCRSHEEVNTELKAQIMKEIRKPGRKYERIFTLLKHVQGSLQTR LIFLQNVIKEASRFKKRMLIEQLENFLDEIHRRANQINHINSN

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH