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Report for CCDS27029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27029.1 Public Mus musculus 14 Pnp 23 108 98 CCDS HistoryNCBI Gene:18950Re-query CCDS DB by CCDS ID:27029.1Re-query CCDS DB by GeneID:18950See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27029.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048615.12 ENSMUSP00000043926.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048615.12Link to Ensembl Protein Viewer:ENSMUSP00000043926.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000048615Re-query CCDS DB by Protein ID:ENSMUSP00000043926
Original member Current member EBI ENSMUST00000178092.1 ENSMUSP00000136557.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178092.1Link to Ensembl Protein Viewer:ENSMUSP00000136557.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178092Re-query CCDS DB by Protein ID:ENSMUSP00000136557
Original member Current member NCBI NM_013632.4 NP_038660.1 Accepted alive Link to Nucleotide Sequence:NM_013632.4Link to Protein Sequence:NP_038660.1Re-query CCDS DB by Nucleotide ID:NM_013632Re-query CCDS DB by Protein ID:NP_038660Link to BLAST:NP_038660.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038660.1 289 P23492 289 99.654% 0 1

Chromosomal Locations for CCDS 27029.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 50944583 50944593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50947852 50948021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50950258 50950361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50950543 50950718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50950832 50951022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 50951404 50951621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGAGAACGAGTTCACATACGAAGATTATGAGACCACTGCCAAGTGGCTTCTGCAACACACTGAATATC
GACCTCAAGTGGCAGTGATCTGTGGTTCCGGCTTAGGAGGGCTGACTGCTCACTTAAAGGAGGCTCAGAT
CTTTGACTACAATGAGATACCCAACTTTCCCCAAAGCACAGTGCAAGGTCACGCAGGCCGACTGGTGTTT
GGATTGCTGAATGGCAGATGCTGTGTGATGATGCAAGGCCGGTTCCATATGTATGAAGGATACTCACTGT
CAAAGGTGACATTCCCAGTGAGAGTTTTCCATCTTCTGGGTGTGGAAACTTTGGTGGTCACCAATGCTGC
TGGAGGACTCAACCCCAATTTTGAAGTTGGAGATATTATGCTGATCCGTGATCACATCAACCTACCTGGT
TTCTGTGGCCAGAACCCTCTCCGGGGCCCCAACGATGAAAGGTTTGGAGTTCGTTTTCCTGCCATGTCTG
ATGCTTATGACCGGGATATGAGGCAGAAGGCTTTCAGTGCCTGGAAACAAATGGGGGAGCAACGAAAGCT
ACAAGAAGGCACCTACGTGATGTTGGCAGGCCCCAACTTTGAGACTGTGGCAGAGAGTCGTCTGCTAAAG
ATGCTGGGGGCAGATGCTGTTGGCATGAGCACAGTCCCAGAAGTTATCGTCGCAAGGCACTGTGGGCTCC
GTGTCTTTGGTTTCTCACTCATTACGAACAAGGTTGTCATGGATTATGAGAACTTGGAGAAGGCCAATCA
CATGGAAGTTCTGGATGCCGGGAAAGCAGCTGCACAGACATTGGAAAGGTTTGTCTCCATTCTTATGGAG
AGCATTCCACTCCCGGATCGTGGCAGCTGA

Translation (289 aa):
MENEFTYEDYETTAKWLLQHTEYRPQVAVICGSGLGGLTAHLKEAQIFDYNEIPNFPQSTVQGHAGRLVF
GLLNGRCCVMMQGRFHMYEGYSLSKVTFPVRVFHLLGVETLVVTNAAGGLNPNFEVGDIMLIRDHINLPG
FCGQNPLRGPNDERFGVRFPAMSDAYDRDMRQKAFSAWKQMGEQRKLQEGTYVMLAGPNFETVAESRLLK
MLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVVMDYENLEKANHMEVLDAGKAAAQTLERFVSILME
SIPLPDRGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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