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Report for CCDS26974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26974.1 Public Mus musculus 14 Psmc6 23 108 98 CCDS HistoryNCBI Gene:67089Re-query CCDS DB by CCDS ID:26974.1Re-query CCDS DB by GeneID:67089See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26974.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022380.8 ENSMUSP00000022380.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022380.8Link to Ensembl Protein Viewer:ENSMUSP00000022380.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000022380Re-query CCDS DB by Protein ID:ENSMUSP00000022380
Original member NCBI NM_025959.3 NP_080235.2 Updated not alive Link to Nucleotide Sequence:NM_025959.3Link to Protein Sequence:NP_080235.2Re-query CCDS DB by Nucleotide ID:NM_025959Re-query CCDS DB by Protein ID:NP_080235
Current member NCBI NM_025959.4 NP_080235.2 Accepted alive Link to Nucleotide Sequence:NM_025959.4Link to Protein Sequence:NP_080235.2Re-query CCDS DB by Nucleotide ID:NM_025959Re-query CCDS DB by Protein ID:NP_080235Link to BLAST:NP_080235.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080235.2 389 P62334 389 100% 0 0

Chromosomal Locations for CCDS 26974.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 45329848 45329932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45330830 45330909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45330987 45331026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45331906 45331958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45334653 45334720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45334917 45335031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45337478 45337565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45340630 45340691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45340773 45340896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45341282 45341343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45343401 45343521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45343647 45343727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45346744 45346815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 45348583 45348701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1170 nt):
ATGGCGGACCCTAGAGATAAGGCGCTTCAGGACTATCGCAAGAAGCTGCTAGAGCACAAGGAGATTGACG
GCCGTCTTAAGGAGCTAAGGGAACAATTAAAAGAACTTACCAAGCAGTATGAAAAGTCTGAAAATGATTT
GAAGGCACTACAAAGTGTTGGACAGATTGTAGGTGAAGTGCTAAAACAGTTAACAGAAGAAAAATTCATC
GTTAAAGCAACAAATGGACCAAGATACGTTGTAGGTTGTCGTCGTCAGCTTGACAAAAGTAAGCTGAAGC
CAGGAACCAGAGTTGCTTTGGATATGACCACACTAACCATCATGAGATATCTGCCAAGAGAGGTGGATCC
ATTGGTTTATAACATGTCTCACGAGGATCCTGGAAATGTATCTTATTCTGAGATTGGAGGCCTGTCAGAA
CAGATTCGGGAGTTAAGAGAGGTAATAGAATTGCCTCTTACAAATCCAGAATTATTCCAGCGTGTAGGAA
TAATACCTCCAAAAGGCTGTTTGCTCTATGGACCGCCAGGCACTGGGAAAACACTCTTGGCACGAGCTGT
TGCCAGCCAGCTGGACTGCAACTTCCTAAAGGTTGTATCTAGTTCTATTGTAGACAAGTACATTGGTGAA
AGTGCTCGTTTGATTAGAGAAATGTTTAATTATGCCAGGGACCACCAGCCATGCATCATTTTTATGGATG
AAATAGATGCTATTGGTGGCCGTCGGTTTTCTGAGGGAACATCAGCTGACAGAGAGATTCAGAGAACTTT
AATGGAGTTACTAAATCAAATGGATGGATTTGATACTCTGCATAGAGTTAAAATGATCATGGCTACAAAC
AGACCAGATACACTGGATCCTGCTTTGCTGCGCCCAGGAAGATTAGATAGAAAAATACATATCGATTTAC
CAAATGAACAAGCAAGATTAGATATATTGAAAATCCACGCAGGACCTATTACAAAGCATGGTGAAATAGA
TTATGAAGCAATTGTAAAGCTTTCAGATGGCTTTAATGGAGCAGACCTGAGAAATGTTTGTACTGAAGCA
GGTATGTTTGCAATTCGTGCCGATCATGATTTTGTAGTTCAGGAAGACTTCATGAAAGCAGTCAGGAAAG
TGGCTGACTCCAAGAAGCTGGAGTCCAAGCTGGACTACAAACCTGTGTGA

Translation (389 aa):
MADPRDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFI
VKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSE
QIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGE
SARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATN
RPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEA
GMFAIRADHDFVVQEDFMKAVRKVADSKKLESKLDYKPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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