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Report for CCDS26971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26971.1 Public Mus musculus 14 Ptgdr 23 108 98 CCDS HistoryNCBI Gene:19214Re-query CCDS DB by CCDS ID:26971.1Re-query CCDS DB by GeneID:19214See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095959.1 ENSMUSP00000093653.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095959.1Link to Ensembl Protein Viewer:ENSMUSP00000093653.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000095959Re-query CCDS DB by Protein ID:ENSMUSP00000093653
Original member Current member NCBI NM_008962.4 NP_032988.3 Accepted alive Link to Nucleotide Sequence:NM_008962.4Link to Protein Sequence:NP_032988.3Re-query CCDS DB by Nucleotide ID:NM_008962Re-query CCDS DB by Protein ID:NP_032988Link to BLAST:NP_032988.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032988.3 357 P70263 357 100% 0 0

Chromosomal Locations for CCDS 26971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 44853226 44853456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 44858411 44859253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1074 nt):
ATGAACGAGTCCTATCGCTGTCAGACATCCACCTGGGTGGAAAGGGGCTCCTCGGCGACGATGGGCGCTG
TGCTCTTCGGTGCGGGGCTTCTGGGCAATCTTCTGGCGCTGGTGCTGCTGGCGCGCTCGGGACTGGGGTC
TTGCCGGCCAGGGCCACTACACCCGCCGCCCTCGGTCTTTTATGTGCTCGTGTGTGGCTTGACGGTCACC
GACTTGCTGGGCAAGTGTCTGATCAGCCCGATGGTCCTGGCTGCCTACGCGCAAAACCAGAGCCTAAAGG
AACTGCTGCCTGCCTCAGGCAATCAGTTATGCGAAACGTTCGCCTTCCTGATGTCCTTCTTTGGGCTAGC
CTCGACCTTACAGCTGTTGGCTATGGCGGTGGAGTGCTGGCTGTCTCTGGGACACCCCTTCTTCTACCAA
AGGCACGTCACCTTGCGCCGGGGAGTGCTGGTGGCACCGGTCGTGGCCGCCTTCTGCTTGGCTTTCTGTG
CGCTCCCCTTTGCTGGTTTTGGGAAGTTCGTGCAGTACTGTCCAGGCACCTGGTGTTTCATCCAGATGAT
CCACAAGGAGCGTTCATTTTCGGTAATAGGCTTCTCTGTGCTCTACTCCAGCCTCATGGCGCTGCTGGTC
CTCGCAACCGTGGTGTGCAACCTGGGTGCCATGTACAACCTCTATGACATGCACAGGCGCCAGAGGCACT
ATCCTCACCGCTGCTCCAGGGACCGCGCCCAGTCAGGCTCAGACTACAGGCACGGGTCCCTGCATCCTTT
GGAGGAGCTGGACCACTTTGTGCTGCTGGCTCTCATGACAGTGCTCTTCACCATGTGTTCCCTGCCTTTA
ATTTATCGTGCGTACTATGGAGCCTTTAAACTTGAGAACAAAGCTGAAGGAGACTCAGAAGACCTCCAAG
CCTTGCGTTTCCTGTCTGTGATTTCCATAGTGGACCCCTGGATCTTCATCATCTTCAGGACTTCAGTATT
CCGGATGTTATTTCACAAGGTTTTCACAAGACCTCTGATCTACAGAAACTGGAGCAGCCATTCCCAGCAA
AGTAACGTGGAATCCACTTTGTGA

Translation (357 aa):
MNESYRCQTSTWVERGSSATMGAVLFGAGLLGNLLALVLLARSGLGSCRPGPLHPPPSVFYVLVCGLTVT
DLLGKCLISPMVLAAYAQNQSLKELLPASGNQLCETFAFLMSFFGLASTLQLLAMAVECWLSLGHPFFYQ
RHVTLRRGVLVAPVVAAFCLAFCALPFAGFGKFVQYCPGTWCFIQMIHKERSFSVIGFSVLYSSLMALLV
LATVVCNLGAMYNLYDMHRRQRHYPHRCSRDRAQSGSDYRHGSLHPLEELDHFVLLALMTVLFTMCSLPL
IYRAYYGAFKLENKAEGDSEDLQALRFLSVISIVDPWIFIIFRTSVFRMLFHKVFTRPLIYRNWSSHSQQ
SNVESTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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