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Report for CCDS26962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26962.1 Public Mus musculus 14 Sftpd 23 108 98 CCDS HistoryNCBI Gene:20390Re-query CCDS DB by CCDS ID:26962.1Re-query CCDS DB by GeneID:20390See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26962.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077136.4 ENSMUSP00000076383.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077136.4Link to Ensembl Protein Viewer:ENSMUSP00000076383.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000077136Re-query CCDS DB by Protein ID:ENSMUSP00000076383
Original member Current member NCBI NM_009160.2 NP_033186.1 Accepted alive Link to Nucleotide Sequence:NM_009160.2Link to Protein Sequence:NP_033186.1Re-query CCDS DB by Nucleotide ID:NM_009160Re-query CCDS DB by Protein ID:NP_033186Link to BLAST:NP_033186.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033186.1 374 P50404 374 100% 0 0

Chromosomal Locations for CCDS 26962.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 41172336 41172712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41174477 41174560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41175628 41175744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41176493 41176609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41176936 41177052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41177293 41177409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 41182937 41183132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGCTGCCCTTTCTCTCCATGCTTGTCTTGCTTGTACAGCCCCTGGGAAATCTGGGAGCAGAAATGAAGA
GCCTCTCGCAGAGATCAGTACCCAACACCTGCACCCTAGTCATGTGTAGCCCAACAGAGAATGGCCTGCC
TGGTCGTGATGGACGGGATGGGAGAGAAGGTCCACGGGGTGAGAAGGGTGATCCAGGTTTGCCAGGACCT
ATGGGGCTCTCAGGGTTGCAGGGCCCTACAGGTCCAGTTGGACCCAAAGGAGAGAATGGCTCTGCTGGCG
AACCTGGACCAAAGGGAGAACGTGGACTAAGTGGACCTCCAGGACTTCCAGGTATTCCTGGTCCAGCTGG
GAAAGAAGGTCCCTCTGGGAAGCAGGGGAACATAGGACCTCAAGGCAAACCAGGTCCTAAAGGAGAGGCT
GGGCCCAAAGGAGAAGTAGGTGCTCCTGGCATGCAAGGATCTACAGGGGCAAAAGGCTCCACAGGCCCCA
AGGGAGAAAGAGGTGCCCCTGGTGTGCAAGGAGCCCCAGGGAATGCTGGAGCAGCAGGACCTGCCGGACC
TGCCGGTCCACAGGGAGCTCCAGGTTCCAGGGGGCCCCCAGGACTCAAGGGGGACAGAGGTGTTCCTGGA
GACAGAGGAATCAAAGGTGAAAGCGGGCTTCCAGACAGTGCTGCTCTGAGGCAGCAGATGGAGGCCTTAA
AAGGAAAACTACAGCGTCTAGAGGTTGCCTTCTCCCACTATCAGAAAGCTGCATTGTTCCCTGATGGCCG
AAGTGTTGGAGACAAGATCTTCAGGACAGCAGACTCTGAAAAGCCTTTTGAGGATGCCCAGGAGATGTGC
AAACAGGCTGGAGGACAGCTGGCCTCCCCACGTTCTGCTACTGAGAATGCTGCCATACAGCAACTCATCA
CAGCCCACAACAAGGCTGCTTTCCTGAGTATGACAGATGTGGGCACAGAGGGCAAGTTCACTTACCCCAC
AGGAGAGCCCCTGGTCTATTCTAATTGGGCTCCAGGGGAGCCCAACAACAATGGTGGAGCAGAGAACTGT
GTGGAGATCTTCACCAATGGGCAATGGAATGATAAGGCTTGTGGAGAGCAGCGCCTTGTTATCTGTGAGT
TCTGA

Translation (374 aa):
MLPFLSMLVLLVQPLGNLGAEMKSLSQRSVPNTCTLVMCSPTENGLPGRDGRDGREGPRGEKGDPGLPGP
MGLSGLQGPTGPVGPKGENGSAGEPGPKGERGLSGPPGLPGIPGPAGKEGPSGKQGNIGPQGKPGPKGEA
GPKGEVGAPGMQGSTGAKGSTGPKGERGAPGVQGAPGNAGAAGPAGPAGPQGAPGSRGPPGLKGDRGVPG
DRGIKGESGLPDSAALRQQMEALKGKLQRLEVAFSHYQKAALFPDGRSVGDKIFRTADSEKPFEDAQEMC
KQAGGQLASPRSATENAAIQQLITAHNKAAFLSMTDVGTEGKFTYPTGEPLVYSNWAPGEPNNNGGAENC
VEIFTNGQWNDKACGEQRLVICEF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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