NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2682.1 Public Homo sapiens 3 CSRNP1 24 110 108 CCDS HistoryNCBI Gene:64651Re-query CCDS DB by CCDS ID:2682.1Re-query CCDS DB by GeneID:64651See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2682.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000273153.10 ENSP00000273153.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000273153.10Link to Ensembl Protein Viewer:ENSP00000273153.5Re-query CCDS DB by Nucleotide ID:ENST00000273153Re-query CCDS DB by Protein ID:ENSP00000273153
Original member Current member EBI ENST00000514182.1 ENSP00000422532.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000514182.1Link to Ensembl Protein Viewer:ENSP00000422532.1Re-query CCDS DB by Nucleotide ID:ENST00000514182Re-query CCDS DB by Protein ID:ENSP00000422532
Original member Current member NCBI NM_001320560.2 NP_001307489.1 Accepted alive Link to Nucleotide Sequence:NM_001320560.2Link to Protein Sequence:NP_001307489.1Re-query CCDS DB by Nucleotide ID:NM_001320560Re-query CCDS DB by Protein ID:NP_001307489Link to BLAST:NP_001307489.1
Original member Current member NCBI NM_033027.4 NP_149016.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033027.4Link to Protein Sequence:NP_149016.2Re-query CCDS DB by Nucleotide ID:NM_033027Re-query CCDS DB by Protein ID:NP_149016Link to BLAST:NP_149016.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307489.1 589 Q96S65 589 100% 0 0
NP_149016.2 589 Q96S65 589 100% 0 0

Chromosomal Locations for CCDS 2682.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 39143055 39144044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39144137 39144451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39144997 39145256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39146478 39146682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGACTGGGCTGTTGAAGAGGAAATTTGACCAGCTGGATGAGGACAACTCCTCGGTCTCCTCCTCCTCCT
CTTCCTCTGGGTGCCAGTCTCGCTCCTGCTCCCCAAGCTCTTCTGTCTCCCGTGCCTGGGACTCAGAGGA
GGAAGGCCCCTGGGATCAGATGCCCCTGCCTGACCGTGACTTCTGCGGCCCCAGAAGTTTCACCCCCCTG
TCTATCCTGAAGCGGGCTCGCCGGGAGCGCCCAGGCCGTGTAGCCTTTGATGGGATCACCGTCTTCTACT
TCCCCCGCTGCCAGGGCTTCACCAGTGTGCCCAGCCGTGGTGGCTGTACTCTGGGTATGGCCCTTCGCCA
CAGTGCTTGCCGTCGCTTCTCTTTGGCTGAGTTTGCGCAGGAGCAAGCCCGTGCACGGCACGAGAAGCTC
CGCCAGCGCTTGAAAGAGGAGAAGTTGGAGATGCTGCAGTGGAAGCTTTCGGCAGCTGGGGTACCCCAGG
CAGAGGCAGGGCTGCCACCTGTGGTGGATGCCATTGATGACGCCTCTGTGGAGGAGGACTTGGCAGTCGC
TGTGGCAGGTGGCCGGTTGGAAGAAGTGAGCTTCCTACAGCCCTACCCAGCCCGGCGACGTCGAGCTCTG
CTGAGGGCTTCAGGTGTGCGAAGGATCGATCGGGAGGAGAAGCGGGAGCTGCAGGCACTGCGCCAATCCC
GGGAGGATTGTGGCTGTCACTGCGATAGGATCTGCGACCCTGAGACCTGCAGCTGCAGCCTGGCAGGCAT
CAAGTGCCAGATGGACCACACAGCATTCCCCTGTGGCTGCTGCAGGGAGGGCTGTGAGAACCCCATGGGC
CGTGTGGAATTTAATCAGGCAAGAGTTCAGACCCATTTCATCCACACACTCACCCGCCTGCAGTTGGAAC
AGGAGGCTGAGAGCTTTAGGGAGCTGGAGGCCCCTGCCCAGGGCAGCCCACCCAGCCCTGGTGAGGAGGC
CCTGGTCCCTACTTTCCCACTGGCCAAGCCCCCCATGAACAATGAGCTGGGAGACAACAGCTGCAGCAGC
GACATGACTGATTCTTCTACAGCATCTTCATCAGCATCGGGCACTAGTGAGGCTCCTGACTGCCCCACCC
ACCCAGGCCTGCCTGGCCCTGGCTTCCAGCCTGGCGTTGATGATGACAGCCTGGCACGCATCTTGAGTTT
CAGTGACTCTGACTTCGGTGGGGAGGAGGAGGAAGAGGAGGAAGGGAGCGTGGGGAACCTGGACAACCTC
AGCTGCTTCCATCCAGCTGACATCTTTGGTACTAGTGACCCTGGTGGCCTGGCCAGCTGGACCCACAGCT
ATTCTGGCTGTAGCTTCACATCAGGCGTCCTGGATGAGAATGCCAACCTGGATGCCAGCTGCTTCCTAAA
TGGTGGCCTTGAAGGGTCAAGGGAAGGCAGCCTTCCTGGCACCTCAGTGCCACCCAGCATGGACGCTGGC
CGGAGTAGCTCAGTGGATCTCAGCTTGTCTTCTTGTGACTCCTTTGAGTTACTCCAGGCTCTGCCAGATT
ATAGTCTGGGGCCTCACTACACATCACAGAAGGTGTCTGACAGCCTGGACAACATCGAGGCACCTCACTT
CCCCCTGCCTGGCCTGTCTCCACCTGGGGATGCCAGCAGTTGCTTCCTGGAGTCCCTCATGGGCTTCTCC
GAGCCAGCCGCCGAAGCCCTAGATCCCTTTATTGACAGCCAGTTTGAGGACACTGTCCCAGCATCTCTAA
TGGAGCCTGTGCCGGTGTGA

Translation (589 aa):
MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLPDRDFCGPRSFTPL
SILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSACRRFSLAEFAQEQARARHEKL
RQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDASVEEDLAVAVAGGRLEEVSFLQPYPARRRRAL
LRASGVRRIDREEKRELQALRQSREDCGCHCDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMG
RVEFNQARVQTHFIHTLTRLQLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSS
DMTDSSTASSSASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNL
SCFHPADIFGTSDPGGLASWTHSYSGCSFTSGVLDENANLDASCFLNGGLEGSREGSLPGTSVPPSMDAG
RSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLPGLSPPGDASSCFLESLMGFS
EPAAEALDPFIDSQFEDTVPASLMEPVPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH